AT3G29100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : vesicle transport V-snare 13 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Arabidopsis v-SNARE (vesicle soluble NSF attachment protein receptor) family that has 3 members: VTI11, VTI12, and VTI13. This gene is not expressed at levels detectable by RT-PCR. However, one EST corresponding to this gene has been isolated. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
vesicle transport V-snare 13 (VTI13); FUNCTIONS IN: SNARE binding, receptor activity; INVOLVED IN: cellular membrane fusion, intra-Golgi vesicle-mediated transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE, N-terminal (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: Vesicle transport v-SNARE family protein (TAIR:AT5G39510.1); Has 695 Blast hits to 693 proteins in 200 species: Archae - 2; Bacteria - 0; Metazoa - 259; Fungi - 142; Plants - 163; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:11075916..11076581 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 22190.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.14 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||
| Length | 195 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEYGSFTVVL YAVDGYFLST FCSFQVKKMD LEARNLPPNV KSSLLVKLRE YKSDLNNFKT EVKRITSGNL NATARDELLE AGMADTLTAS ADQRSRLMMS 101: TDHLGRTTDR IKDSRRTILE TEELGVSILQ DLHGQRQSLL RAHETLHGVD DNVGKSKKIL TTMTRRMNRN KWTIGAIITV LVLAIIFILY FKLTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)