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AT1G02300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine proteinases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02305.1); Has 7127 Blast hits to 7085 proteins in 649 species: Archae - 51; Bacteria - 96; Metazoa - 3215; Fungi - 4; Plants - 1554; Viruses - 146; Other Eukaryotes - 2061 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4870eggNOG:KOG1543EMBL:CP002684EnsemblPlants:AT1G02300
EnsemblPlants:AT1G02300.1entrez:839576GeneID:839576GO:GO:0004197
GO:GO:0050790Gramene:AT1G02300.1hmmpanther:PTHR12411hmmpanther:PTHR12411:SF367
InParanoid:F4HVZ1InterPro:IPR000668InterPro:IPR012599InterPro:IPR013128
InterPro:IPR025660iPTMnet:F4HVZ1KEGG:ath:AT1G02300KO:K01363
merops:C01.A10OMA:WITECLLPANTHER:PTHR12411PaxDb:F4HVZ1
Pfam:PF00112Pfam:PF08127PRIDE:F4HVZ1PRINTS:PR00705
PROSITE:PS00639ProteinModelPortal:F4HVZ1Proteomes:UP000006548RefSeq:NP_563647.1
scanprosite:PS00639SMART:SM00645SMR:F4HVZ1STRING:3702.AT1G02300.1
SUPFAM:SSF54001TAIR:AT1G02300TMHMM:TMhelixUniGene:At.43952
UniProt:F4HVZ1
Coordinates (TAIR10) chr1:+:453288..455376
Molecular Weight (calculated) 42265.50 Da
IEP (calculated) 7.14
GRAVY (calculated) -0.06
Length 379 amino acids
Sequence (TAIR10)
(BLAST)
001: MADSCCIRLH LLASVFLLLF SSFNLQGIAA ENLSKQKLTS LILQNEIVKE VNENPNAGWK AAFNDRFANA TVAEFKRLLG VIQTPKTAYL GVPIVRHDLS
101: LKLPKEFDAR TAWSHCTSIR RILVGYILNN VLLWSTITLW FWFLLGHCGS CWAFGAVESL SDRFCIKYNL NVSLSANDVI ACCGLLCGFG CNGGFPMGAW
201: LYFKYHGVVT QECDPYFDNT GCSHPGCEPT YPTPKCERKC VSRNQLWGES KHYGVGAYRI NPDPQDIMAE VYKNGPVEVA FTVYEDFAHY KSGVYKYITG
301: TKIGGHAVKL IGWGTSDDGE DYWLLANQWN RSWGDDGYFK IRRGTNECGI EQSVVAGLPS EKNVFKGITT SDDLLVSSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)