AT2G43465.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.457 plasma membrane 0.429 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding ASCH domain protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding ASCH domain protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ProFAR isomerase-like (InterPro:IPR010759), ASCH domain (InterPro:IPR007374); BEST Arabidopsis thaliana protein match is: RNA-binding ASCH domain protein (TAIR:AT3G03320.1); Has 127 Blast hits to 127 proteins in 42 species: Archae - 39; Bacteria - 18; Metazoa - 2; Fungi - 4; Plants - 39; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18047732..18049709 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43757.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.45 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||
| Length | 388 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIKIRDCLDE MVKFTLDYCV EFDIGLTGEF CSGLLCGESV LHDGERIESS SYALLHRFSG VPDYPLYKVL ALGLLKSIDS GSFCGTFEKI SLGKEVIRLK 101: EKEDEWSKLI NQKGSELVNA LKDVFSELQV QEPLFSLMKD GIKTVEARCF EEEYDRIRRG GSMVMINKCL MFEVLELHQY ASFYELLKAE SSEKVFPGTK 201: TVEEGMQMFR KLYDTDQENF NGVVAIHLSK SVAQPCVALA HILSGLSYTG VQNLLGLSHT TGSIFHALPP PRSMLLSSFM LPYKPKIKGC RLSHGARALA 301: KHVDRSSDGF WGVLQGTDSD KNERAMDIIN RFIGNCCWMN IHIVPPHGEV FEIRVAQGYG ARWSRDGTKF IGFLEPYMED GHSMAWKH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)