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AT5G65685.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-Glycosyltransferase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: starch synthase activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Starch synthase, catalytic domain (InterPro:IPR013534); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G65685-MONOMERBioCyc:ARA:GQT-1599-MONOMERCAZy:GT5eggNOG:COG0297
eggNOG:ENOG410IGEPEMBL:AK118938EMBL:BT029154EMBL:CP002688
EMBL:KJ138627EnsemblPlants:AT5G65685EnsemblPlants:AT5G65685.1entrez:836698
ExpressionAtlas:Q8GWC5GeneID:836698GO:GO:0009011Gramene:AT5G65685.1
gramene_pathway:2.4.1.21gramene_pathway:PWY-622hmmpanther:PTHR12526hmmpanther:PTHR12526:SF382
InterPro:IPR013534KEGG:00500+2.4.1.21ncoils:CoilOMA:PHIINIL
Pfam:PF08323PhylomeDB:Q8GWC5Proteomes:UP000006548RefSeq:NP_569018.1
SMR:Q8GWC5STRING:3702.AT5G65685.1SUPFAM:SSF53756TAIR:AT5G65685
UniGene:At.26575unipathway:UPA00164UniProt:Q8GWC5
Coordinates (TAIR10) chr5:-:26273252..26275864
Molecular Weight (calculated) 52066.50 Da
IEP (calculated) 6.27
GRAVY (calculated) -0.24
Length 460 amino acids
Sequence (TAIR10)
(BLAST)
001: MQATANLPTI WNLSLRGSSS KVHIVNPRHR KSHALHCLRS EGHEEFDNSQ KSLGQSSITK EAKHKDIWNL FREAQKNIMI LNKQRLAAVD ELEQLKKDKE
101: ELLERINQLE AESQIVIKKD KSSLFWELLL RIDSMVINGL VNIEEASSMR KLVKEHEANI SVFPLDVLQQ GDAEILAELR RFTNKGKRNG LHVIHICTEM
201: APLVSVGPLA SYITGLSCAL QEEGYMVEVI LPKYSTLDLD EIEGLREIEA DAYSYFDGQL HANRIWNGVV SGIGVTLIQP VYYSSMFSRD KVYGYQDDFD
301: RFAYFSRASL DYIAKSGKQP DVLHIHNWQT AIVGPLFWDV FVNQGLEGTR ILLTCQDFDK GLVPPEKLEL CGLDPAELHR LDRLQDNTNP HFVNILKGGV
401: VYSNKVVIMS SSHSSIPGLE PTLAIHKDKL FFAPFGMDNS MEKDLCCDLH VSAYTSIKNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)