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AT3G55080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SET domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SET domain-containing protein; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1); Has 1136 Blast hits to 1133 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 243; Fungi - 329; Plants - 401; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZN0HeggNOG:KOG1338EMBL:BT020257EMBL:BT021111
EMBL:CP002686EnsemblPlants:AT3G55080EnsemblPlants:AT3G55080.1entrez:824674
ExpressionAtlas:Q5PP40Gene3D:3.90.1420.10GeneID:824674Gramene:AT3G55080.1
hmmpanther:PTHR13271hmmpanther:PTHR13271:SF11HOGENOM:HOG000139347InterPro:IPR001214
InterPro:IPR015353OMA:ARVLCCTPfam:PF00856Pfam:PF09273
PhylomeDB:Q5PP40Proteomes:UP000006548RefSeq:NP_191068.2SMR:Q5PP40
STRING:3702.AT3G55080.1SUPFAM:SSF82199TAIR:AT3G55080UniGene:At.50280
UniProt:Q5PP40
Coordinates (TAIR10) chr3:-:20411476..20415830
Molecular Weight (calculated) 52694.50 Da
IEP (calculated) 7.30
GRAVY (calculated) -0.21
Length 463 amino acids
Sequence (TAIR10)
(BLAST)
001: MLFCISTVKL FGFQQRRNVS SLAKRFSLAG KLTLELQTQA SLDNNFLPWL ERIAGAKITN TLSIGKSTYG RSLFASKVIY AGDCMLKVPF NAQITPDELP
101: SDIRVLLSNE VGNIGMLAAV LIREKKMGQK SRWVPYISRL PQPAEMHSSI FWGEDELSMI RCSAVHQETV KQKAQIEKDF SFVAQAFKQH CPIVTERPDL
201: EDFMYAYALV GSRAWENSKR ISLIPFADFM NHDGLSASIV LRDEDNQLSE VTADRNYSPG DEVFIKYGEF SNATLMLDFG FTFPYNIHDE VQIQMDVPND
301: DPLRNMKLGL LQTHHTRTVK DINIFHSSCD TFTIKEVKSA IGKGKGIPQS LRAFARVLCC IIPQELNDLS KEAAQNDGRL ARLPFKDGNR ELEAHKILLS
401: HINRLIEDHS VCIKEMEECY FVSQRFAVRR QMARDLLYGE LRVLRSAAEW LNHYCTTLLS ETM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)