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AT3G13800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.980
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Metallo-hydrolase/oxidoreductase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Metallo-hydrolase/oxidoreductase superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: Metallo-hydrolase/oxidoreductase superfamily protein (TAIR:AT1G30300.1); Has 2828 Blast hits to 2806 proteins in 769 species: Archae - 68; Bacteria - 1382; Metazoa - 7; Fungi - 23; Plants - 100; Viruses - 0; Other Eukaryotes - 1248 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1235eggNOG:ENOG410IE30EMBL:AK220745EMBL:AK229851
EMBL:BT022045EMBL:BT024892EMBL:CP002686EnsemblPlants:AT3G13800
EnsemblPlants:AT3G13800.1entrez:820592ExpressionAtlas:Q570G3Gene3D:3.60.15.10
GeneID:820592GO:GO:0016787Gramene:AT3G13800.1hmmpanther:PTHR12553
hmmpanther:PTHR12553:SF38HOGENOM:HOG000223792InterPro:IPR001279OMA:PHVDCLT
Pfam:PF12706PhylomeDB:Q570G3Proteomes:UP000006548RefSeq:NP_187996.2
SMART:SM00849SMR:Q570G3STRING:3702.AT3G13800.1SUPFAM:SSF56281
TAIR:AT3G13800UniGene:At.39341UniProt:Q570G3
Coordinates (TAIR10) chr3:+:4538879..4541366
Molecular Weight (calculated) 40385.60 Da
IEP (calculated) 7.58
GRAVY (calculated) -0.17
Length 361 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAMSAVLSL GLGTLRPSHR SLSCFDSLRH HQTSFLRCHQ SLISRNTTRS PLNKILQACL QSNSANGDAL VSSSDESSEI VFMGTGTSEG IPRVSCLTNP
101: LKTCSVCTKA TEPGNRNRRL NTSILVRYIR PSGTSNILID CGKFFYHSAL RWFPTFGLRT LDAVVITHSH ADAIGGLDDL RDWTNNVQPH IPIYTAIRDL
201: EVMKKTHYYL VDTSVIIPGA AVSELEFKVI HEDQPFVVND LKITPLPVWH GSNYRSLGFR FGNVCYISDV SDIPEETYPL LKDCDLLIMD ALRPDRSSAT
301: HFGLPRALEE VRKIKPKRTL FTGMMHLMDH EKVSEELEKL RNTEGLDVQL SYDGLRVPIS I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)