AT1G24610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rubisco methyltransferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Rubisco methyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 14 (TAIR:AT4G20130.1); Has 1056 Blast hits to 1053 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 281; Plants - 368; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:8720906..8722711 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52592.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.15 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||
| Length | 476 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANSKMAIAS LAAQIRPFTC LAASLPSRLA PHPPDLIRWI KREGGFVHHA VKLSQETQFG IGLISTEQIS PGTDLISLPP HVPLRFESDD SSSSSSSLLS 101: ALARRVPEEL WAMKLGLRLL QERANADSFW WPYISNLPET YTVPIFFPGE DIKNLQYAPL LHQVNKRCRF LLEFEQEIRR TLEDVKASDH PFSGQDVNAS 201: ALGWTMSAVS TRAFRLHGNK KLQGGSSDDV PMMLPLIDMC NHSFKPNARI IQEQNGADSN TLVKVVAETE VKENDPLLLN YGCLSNDFFL LDYGFVIESN 301: PYDTIELKYD EQLMDAASMA AGVSSPKFSS PAPWQHQLLS QLNLAGEMPN LKVTIGGPEP VEGRLLAALR ILLCGELVEV EKHDSDTLKS LSAVAPFGIA 401: NEIAVFRTVI ALCVIALSHF PTKIMEDEAI IKQGVSATAE LSIKYRIQKK SVIIDVMKDL TRRVKLLSSK ETPTAA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)