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AT2G47940.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
FP Images

Arabidopsis cell culture (plastidal marker)

At2g47940-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEGP protease 2
Curator
Summary (TAIR10)
Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.
Computational
Description (TAIR10)
DEGP protease 2 (DEGP2); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: chloroplast stromal thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 9 (TAIR:AT5G40200.1); Has 15046 Blast hits to 15035 proteins in 2533 species: Archae - 101; Bacteria - 10614; Metazoa - 317; Fungi - 14; Plants - 376; Viruses - 0; Other Eukaryotes - 3624 (source: NCBI BLink).
Protein Annotations
EC:3.4.21.-eggNOG:COG0265eggNOG:KOG1320EMBL:AC005309
EMBL:AC006072EMBL:AF245171EMBL:AF326865EMBL:AF349516
EMBL:AY075700EMBL:AY102139EMBL:CP002685EnsemblPlants:AT2G47940
EnsemblPlants:AT2G47940.1entrez:819406ExpressionAtlas:O82261Gene3D:2.30.42.10
GeneID:819406Genevisible:O82261GO:GO:0004252GO:GO:0009507
GO:GO:0009533GO:GO:0009535GO:GO:0009570GO:GO:0009658
GO:GO:0009941GO:GO:0010206GO:GO:0030163hmmpanther:PTHR22939
hmmpanther:PTHR22939:SF83HOGENOM:HOG000239474InParanoid:O82261InterPro:IPR001478
InterPro:IPR001940InterPro:IPR009003InterPro:IPR015724MEROPS:S01.279
OMA:IGYEDMSPANTHER:PTHR22939:SF83PaxDb:O82261PDB:4FLN
PDBsum:4FLNPfam:O82261Pfam:PF13180Pfam:PF13365
PhylomeDB:O82261PIR:D84921PRIDE:O82261PRINTS:PR00834
PRO:PR:O82261ProteinModelPortal:O82261Proteomes:UP000006548RefSeq:NP_566115.1
SMR:O82261STRING:3702.AT2G47940.1SUPFAM:SSF50156SUPFAM:SSF50494
TAIR:AT2G47940tair10-symbols:DEGP2UniGene:At.12952UniProt:O82261
Coordinates (TAIR10) chr2:-:19618372..19622164
Molecular Weight (calculated) 66805.40 Da
IEP (calculated) 5.92
GRAVY (calculated) -0.21
Length 607 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASVANCCF SVLNASVKIQ SSSISSPWCF VSASSLTPRA SSNIKRKSSR SDSPSPILNP EKNYPGRVRD ESSNPPQKMA FKAFGSPKKE KKESLSDFSR
101: DQQTDPAKIH DASFLNAVVK VYCTHTAPDY SLPWQKQRQF TSTGSAFMIG DGKLLTNAHC VEHDTQVKVK RRGDDRKYVA KVLVRGVDCD IALLSVESED
201: FWKGAEPLRL GHLPRLQDSV TVVGYPLGGD TISVTKGVVS RIEVTSYAHG SSDLLGIQID AAINPGNSGG PAFNDQGECI GVAFQVYRSE ETENIGYVIP
301: TTVVSHFLTD YERNGKYTGY PCLGVLLQKL ENPALRECLK VPTNEGVLVR RVEPTSDASK VLKEGDVIVS FDDLHVGCEG TVPFRSSERI AFRYLISQKF
401: AGDIAEIGII RAGEHKKVQV VLRPRVHLVP YHIDGGQPSY IIVAGLVFTP LSEPLIEEEC EDTIGLKLLT KARYSVARFR GEQIVILSQV LANEVNIGYE
501: DMNNQQVLKF NGIPIRNIHH LAHLIDMCKD KYLVFEFEDN YVAVLEREAS NSASLCILKD YGIPSERSAD LLEPYVDPID DTQALDQGIG DSPVSNLEIG
601: FDGLVWA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)