suba logo
AT3G25660.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Amidase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Amidase family protein; FUNCTIONS IN: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor; INVOLVED IN: translation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Amidase, conserved site (InterPro:IPR020556), Amidase (InterPro:IPR000120), Glutamyl-tRNA(Gln) amidotransferase A subunit (InterPro:IPR004412); BEST Arabidopsis thaliana protein match is: fatty acid amide hydrolase (TAIR:AT5G64440.1); Has 20819 Blast hits to 20789 proteins in 2485 species: Archae - 270; Bacteria - 10912; Metazoa - 560; Fungi - 1426; Plants - 399; Viruses - 0; Other Eukaryotes - 7252 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G25660-MONOMEREC:6.3.5.7eggNOG:COG0154eggNOG:KOG1211
EMBL:AF224745EMBL:AK226499EMBL:AP001313EMBL:AY045664
EMBL:BT000644EMBL:CP002686EnsemblPlants:AT3G25660EnsemblPlants:AT3G25660.1
entrez:822154Gene3D:3.90.1300.10GeneID:822154Genevisible:Q9LI77
GO:GO:0005524GO:GO:0005739GO:GO:0009507GO:GO:0009570
GO:GO:0030956GO:GO:0032543GO:GO:0050567GO:GO:0070681
Gramene:AT3G25660.1gramene_pathway:6.3.5.-gramene_pathway:PWY490-4HAMAP:MF_00120
hmmpanther:PTHR11895hmmpanther:PTHR11895:SF101HOGENOM:HOG000116699InParanoid:Q9LI77
InterPro:IPR000120InterPro:IPR004412InterPro:IPR020556InterPro:IPR023631
iPTMnet:Q9LI77KEGG:00970+6.3.5.7KEGG:ath:AT3G25660KO:K02433
OMA:KEYFGAGPANTHER:PTHR11895PaxDb:Q9LI77Pfam:PF01425
Pfam:Q9LI77PhylomeDB:Q9LI77PRIDE:Q9LI77PRO:PR:Q9LI77
PROSITE:PS00571ProteinModelPortal:Q9LI77Proteomes:UP000006548RefSeq:NP_189194.1
scanprosite:PS00571SMR:Q9LI77STRING:3702.AT3G25660.1SUPFAM:SSF75304
TAIR:AT3G25660TIGRfam:TIGR00132TIGRFAMs:TIGR00132UniGene:At.5929
UniProt:Q9LI77
Coordinates (TAIR10) chr3:-:9339640..9342044
Molecular Weight (calculated) 57184.70 Da
IEP (calculated) 6.52
GRAVY (calculated) 0.00
Length 537 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSTLQPPRS LSLLPLRRFQ ISKTIVSAAS SKTIDTSVIS PPQSQILTTR RSLLSGETTA VEIAKSYLSR IRLTEPQLKC FLHVSENVLK DAQEIDQRIA
101: KGEELGPLAG VLIGVKDNIC TQGMPSTAAS RILEHYRPPF DATAVKKIKE LGGIVVGKTN MDEFGMGSTT EASAFQVTAN PWDLSRVPGG SSGGSAAAVA
201: ARQCMVSLGS DTGGSVRQPA SFCGVVGLKP TYGRVSRFGL MAYASSLDVI GCFGSTVADA GMLLHAISGY DRFDSTSSKQ DVPEFQSQFL SVDHFESKPL
301: NGVKVGIIRE TLEDGVDSGV RSATQEAASH LEALGCILTE VSLPSFSLGL PAYYVIASSE SSSNLSRYDG VRYGNQVMAE ELNKLYECSR GEGFGGEVKM
401: RILMGTYALS AGYYDAYYKR AQQVRTLIRK DFKAALEQND ILISPAAPSA AYKIGEKKDD PLAMYAGDIM TVNVNLAGLP AMVLPCGLVE GGPSGLPVGL
501: QMIGAAFDEE KLLKVGHIFE QTLKGSSFVP PLLANVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)