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AT3G63490.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:27122571 (2016): mitochondrion
  • PMID:26987276 (2016): plastid
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L1p/L10e family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, bacterial-type (InterPro:IPR005878), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 9168 Blast hits to 9162 proteins in 2816 species: Archae - 276; Bacteria - 5341; Metazoa - 152; Fungi - 277; Plants - 105; Viruses - 0; Other Eukaryotes - 3017 (source: NCBI BLink).
Protein Annotations
BioGrid:10838eggNOG:COG0081eggNOG:KOG1569EMBL:AL163818
EMBL:AY053410EMBL:AY059929EMBL:AY133519EMBL:BT001191
EMBL:CP002686EMBL:X90855EnsemblPlants:AT3G63490EnsemblPlants:AT3G63490.1
entrez:825524ExpressionAtlas:Q9LY66Gene3D:3.30.190.20Gene3D:3.40.50.790
GeneID:825524Genevisible:Q9LY66GO:GO:0003735GO:GO:0005634
GO:GO:0006412GO:GO:0009507GO:GO:0009535GO:GO:0009570
GO:GO:0009941GO:GO:0015934GO:GO:0016020GO:GO:0019843
HAMAP:MF_01318_Bhmmpanther:PTHR23105hmmpanther:PTHR23105:SF5HOGENOM:HOG000207015
InParanoid:Q9LY66InterPro:IPR005878InterPro:IPR016094InterPro:IPR016095
InterPro:IPR023673InterPro:IPR023674InterPro:IPR028364iPTMnet:Q9LY66
KEGG:ath:AT3G63490KO:K02863MINT:MINT-8065799OMA:MAACATH
PaxDb:Q9LY66Pfam:PF00687Pfam:Q9LY66PhylomeDB:Q9LY66
PIR:T49190PIR:T51934PRIDE:Q9LY66PRO:PR:Q9LY66
PROSITE:PS01199ProteinModelPortal:Q9LY66Proteomes:UP000006548RefSeq:NP_191908.1
scanprosite:PS01199SMR:Q9LY66STRING:3702.AT3G63490.1SUPFAM:SSF56808
SwissPalm:Q9LY66TAIR:AT3G63490TIGRfam:TIGR01169TIGRFAMs:TIGR01169
UniGene:At.24203UniGene:At.69654UniProt:Q9LY66
Coordinates (TAIR10) chr3:+:23444269..23446020
Molecular Weight (calculated) 37634.50 Da
IEP (calculated) 9.90
GRAVY (calculated) -0.24
Length 346 amino acids
Sequence (TAIR10)
(BLAST)
001: MAACATHSSL MLAYAAASTR SQDLTPTPSL FSFASSRPNH LSFPLLLLGG SRDRRCAAID RASNHKFIVS AVAAEADLDT EEDLEQTATA VLDPPKPKKG
101: KAALVLKRDR TRSKRFLEIQ KLRETKKEYD VNTAISLLKQ TANTRFVESV EAHFRLNIDP KYNDQQLRAT VSLPKGTGQT VIVAVLAQGE KVDEAKSAGA
201: DIVGSDDLIE QIKGGFMEFD KLIASPDMMV KVAGLGKILG PRGLMPNPKA GTVTANIPQA IEEFKKGKVE FRADKTGIVH IPFGKVNFTE EDLLINFLAA
301: VKSVETNKPK GAKGVYWKSA HICSSMGPSI KLNIREMIDF KPPTAN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)