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AT5G08540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23549413 (2013): plastid
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22923678 (2012): plastid
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:21311031 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:15322131 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQDQeggNOG:ENOG410XQY8EMBL:AY035084EMBL:AY051035
EMBL:CP002688EnsemblPlants:AT5G08540EnsemblPlants:AT5G08540.1entrez:830754
GeneID:830754GO:GO:0009507GO:GO:0009535GO:GO:0009536
GO:GO:0009941Gramene:AT5G08540.1hmmpanther:PTHR36793hmmpanther:PTHR36793:SF1
KEGG:ath:AT5G08540OMA:MLCKSIDPhylomeDB:Q93VT6ProMEX:Q93VT6
Proteomes:UP000006548RefSeq:NP_568200.1STRING:3702.AT5G08540.1TAIR:AT5G08540
UniGene:At.50704UniGene:At.8764UniProt:Q93VT6
Coordinates (TAIR10) chr5:+:2763914..2765431
Molecular Weight (calculated) 38657.40 Da
IEP (calculated) 5.59
GRAVY (calculated) -0.40
Length 346 amino acids
Sequence (TAIR10)
(BLAST) 		001: MTSLLLPSSQ FLQTRTQNNG QPFLLPLTPL FAPLPSLRQL RPKHISISAA APKKKSETVT APTPAAKKNS SVEEETEEEV EEDMPWIQEK ALDLVEFTGS
101: VSQAIPGPRV GSSKLPWMLA VPLAYAGVTF VTAFVKTVQK FSSPKAQRKK LVNQNAMLCR SIDELLRKAG TVHSSELKAL EQKTEFNMEE ILRKYIRYAL
201: NEKPFNPDLV ADLIHLRKAS GLNDSQIPEI LNEISRRIVK EKGPVVMKMQ GFTEKGFKRK LAVQALFGKI YYLSELPDFC SKDNSLIVKE IFGVTDEDAE
301: KLRIHALAEA GDIEALEKMV EFEKTAESSS DKEEDSNEED DSNTTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)