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AT1G18440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peptidyl-tRNA hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2); Has 8043 Blast hits to 8040 proteins in 2597 species: Archae - 0; Bacteria - 5299; Metazoa - 47; Fungi - 102; Plants - 126; Viruses - 0; Other Eukaryotes - 2469 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G18440-MONOMERBioGrid:23663EC:3.1.1.29eggNOG:COG0193
eggNOG:KOG2255EMBL:AC013354EMBL:AK119054EMBL:BT005284
EMBL:CP002684EnsemblPlants:AT1G18440EnsemblPlants:AT1G18440.1entrez:838424
Gene3D:3.40.50.1470GeneID:838424Genevisible:Q8GW64GO:GO:0004045
GO:GO:0009507GO:GO:0009570Gramene:AT1G18440.1HAMAP:MF_00083
hmmpanther:PTHR17224hmmpanther:PTHR17224:SF5HOGENOM:HOG000004797InParanoid:Q8GW64
InterPro:IPR001328InterPro:IPR018171KEGG:ath:AT1G18440KO:K01056
OMA:FEMVDALPANTHER:PTHR17224PaxDb:Q8GW64Pfam:PF01195
Pfam:Q8GW64PhylomeDB:Q8GW64PIR:C86318PRIDE:Q8GW64
PRO:PR:Q8GW64PROSITE:PS01195PROSITE:PS01196ProteinModelPortal:Q8GW64
Proteomes:UP000006548RefSeq:NP_173279.2scanprosite:PS01195scanprosite:PS01196
SMR:Q8GW64STRING:3702.AT1G18440.1SUPFAM:SSF53178TAIR:AT1G18440
TIGRfam:TIGR00447TIGRFAMs:TIGR00447UniGene:At.22357UniProt:Q8GW64
Coordinates (TAIR10) chr1:+:6345994..6347686
Molecular Weight (calculated) 31563.60 Da
IEP (calculated) 10.45
GRAVY (calculated) -0.13
Length 288 amino acids
Sequence (TAIR10)
(BLAST)
001: MKAVAFPAKI ANLSFPSNCC SLFFRSPATF LSPALPCRKL TKGIRGLEGL MSQCLSSSSQ SLSFSSNSFS SQPESELLQA LPSSKPKSPP LQLPWLIVGL
101: GNPGKKYQGT RHNVGFEMVD ALADAEGISM NTVNFKALFG KGVIGNIPIM LAKPQTFMNL SGESVGQIVS FYKIPLKQVL VVYDDLDLPF GKLRLLPKGG
201: HGGHNGMRSI IDRLKGSRDF PRLRIGIGRP PGKMDTANFV LRQFNRQEQE ELDHTFQTGL EAIRILLLEG FNKSATFVNT RKSMEQLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)