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AT1G53120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding S4 domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding S4 domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding S4 (InterPro:IPR002942), Photosystem II S4 domain protein (InterPro:IPR017506); Has 1630 Blast hits to 1630 proteins in 768 species: Archae - 0; Bacteria - 1422; Metazoa - 2; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111QEKeggNOG:KOG4837EMBL:AY059839EMBL:BT001219
EMBL:BT002414EMBL:BT008717EMBL:CP002684EnsemblPlants:AT1G53120
EnsemblPlants:AT1G53120.1entrez:841746Gene3D:3.10.290.10GeneID:841746
GO:GO:0003723GO:GO:0009507Gramene:AT1G53120.1hmmpanther:PTHR32219
hmmpanther:PTHR32219:SF3HOGENOM:HOG000048758InterPro:IPR002942InterPro:IPR017506
KEGG:ath:AT1G53120OMA:GMSRSKMPfam:PF01479Pfscan:PS50889
PhylomeDB:Q93YQ0PROSITE:PS50889Proteomes:UP000006548RefSeq:NP_564622.1
SMART:SM00363SMR:Q93YQ0STRING:3702.AT1G53120.1SUPFAM:SSF55174
TAIR:AT1G53120TIGRfam:TIGR03069TIGRFAMs:TIGR03069UniGene:At.16238
UniGene:At.66953UniProt:Q93YQ0
Coordinates (TAIR10) chr1:+:19792798..19794605
Molecular Weight (calculated) 34557.10 Da
IEP (calculated) 9.42
GRAVY (calculated) 0.12
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVTSLAPPW VILRLAFRSV AASSCLHTNQ KTLITNLSIP TSFPLRQSAL RRCYSAEAIK GDVDFLLKGV GDQAVAKEVK QILEMARRAS SKREVLHTDF
101: LTPPIVKESV SLLEKFADVK IVAQGGYPEA ERCRISIGHP DVLTSDPDIV AALSITGNFG FQPCSHGDFL GAILGTGISR EKLGDILIQE EKGAQVLIVP
201: ELVDFVVTAL DKVGNVGVTC SKIPLLALEY EPPRTNSFKT VEASLRIDAV ASAGFKISRS KLVDLISSKD VRVNWATVTK NGTIVKTGDV VSVSGKGRLK
301: IGEINETKKG KFAVEIIRYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)