AT2G17970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G36090.3); Has 213 Blast hits to 213 proteins in 60 species: Archae - 0; Bacteria - 4; Metazoa - 58; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7819116..7821276 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57430.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.33 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||||||||||||||
| Length | 507 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENDPFLRQY QPSELKIASE FLTNWLPFLS KDLCKDCNHL LSNRIRSLDP AHCSNNTDKV DGECKTGSCS VVENMGSERA SNNVDDNYDE KSENGEDCDN 101: HSLGSWKGSE IVFGSFPEDF SSVLQSRPAV VETASPRMRW ADMAQEDEFD EEEEEEEEER DSSRKGFDAS SMKTPEKPKL SRDQRENLRL INVKRKKDFI 201: CLERVKGKIV NVLDGLELHT GVFSAVEQKR IVDQVYQLQE KGRRGELKKR TFTAPHKWMR GKGRETIQFG CCYNYAPDRA GNPPGILQRE EVDPLPHLFK 301: VIIRKLIKWH VLPPTCVPDS CIVNIYDEGD CIPPHIDNHD FLRPFCTISF LSECDILFGS NLKVEGPGDF SGSYSIPLPV GSVLVLNGNG ADVAKHCVPA 401: VPTKRISITF RKMDESKRPV WFTPEPDLQG IEPLPLDLNR SGSTSRFSRL NNHNGTNQRG HGRRGGGNGY DSRGYYNPER SSEHNDSGDW PSSQRRGMPR 501: PSRRNYG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)