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AT2G20850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : STRUBBELIG-receptor family 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
STRUBBELIG-receptor family 1 (SRF1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 3 (TAIR:AT4G03390.1); Has 150345 Blast hits to 104966 proteins in 4098 species: Archae - 89; Bacteria - 11039; Metazoa - 39266; Fungi - 7103; Plants - 77215; Viruses - 282; Other Eukaryotes - 15351 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G20850-MONOMERBioGrid:1971eggNOG:COG0515EMBL:AC006234
EMBL:AY056176EMBL:AY518286EMBL:BT001939EMBL:CP002685
EMBL:DQ914917EMBL:DQ914918EMBL:DQ914919EMBL:DQ914920
EnsemblPlants:AT2G20850EnsemblPlants:AT2G20850.1entrez:816618Gene3D:3.80.10.10
GeneID:816618Genevisible:Q06BH3GO:GO:0004672GO:GO:0005524
GO:GO:0005886GO:GO:0009506GO:GO:0016021hmmpanther:PTHR27001
hmmpanther:PTHR27001:SF91HOGENOM:HOG000239794InParanoid:Q06BH3InterPro:IPR000719
InterPro:IPR001245InterPro:IPR001611InterPro:IPR011009InterPro:IPR013210
InterPro:IPR032675iPTMnet:Q06BH3KEGG:ath:AT2G20850OMA:ESHEIDM
PaxDb:Q06BH3Pfam:PF07714Pfam:PF08263Pfam:PF13855
Pfam:Q06BH3Pfscan:PS50011PhylomeDB:Q06BH3PIR:B84594
PRIDE:Q06BH3PRO:PR:Q06BH3PROSITE:PS50011ProteinModelPortal:Q06BH3
Proteomes:UP000006548Reactome:R-ATH-450302Reactome:R-ATH-450321RefSeq:NP_565489.2
SMR:Q06BH3STRING:3702.AT2G20850.1SUPFAM:SSF52058SUPFAM:SSF56112
TAIR:AT2G20850tair10-symbols:SRF1TMHMM:TMhelixUniGene:At.26365
UniProt:Q06BH3
Coordinates (TAIR10) chr2:-:8975670..8979182
Molecular Weight (calculated) 84828.40 Da
IEP (calculated) 7.17
GRAVY (calculated) -0.27
Length 775 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSMRSGRDN NICFLGFLSF ALISLPSLSL ALTNPDDVAA INSLFLALES PLLPGWVASG GDPCGESWQG VLCNASQVET IILISANLGG ELGVGLNMFT
101: SLKAMDFSNN HIGGSIPSTL PVSLQNLFLS GNNFTGTIPE SLSSLKSLSV MSLNNNLLSG KIPDVFQDLG LMINIDLSSN NLSGPLPPSM QNLSTLTSLL
201: LQNNHLSGEL DVLQDLPLKD LNVENNLFNG PIPEKLLSIP NFIKGGNLFN VTIAPSPSPE TPPSPTSPKR PFFGPPSPNA SAGHGQAHVR SPPSDHHPSR
301: PTPQGKEDSF TSKRIIWISI LGAFSFVVLA LVCLLCGRKC LRKREDSEQL SKPHLTSEYG RAREGSRSNA SMLPPSNTFN KDKEARPKER VGGASKLHGG
401: AERSVGSESK QESHEIDMNG NAMDLMHPSS IPPIKRVIAK ATEPAEASLK RTTSKSHGPL TAVKHFTVAS LQQHTNSFSH ENLIGTGMLG SVYRAELPGG
501: KLFAVRKLDK KSPNHEEEGK FLELVNNIDR IRHANIVQLV GFCSEHSQRL LIHEYCRNGT LHDLLHIDDR LKIELSWNVR VRIALEAAKA LEYLHEICDP
601: PSIHRNFKSA NILLDDDIRV HVSDCGLAPL ISSGAVSQLS GQLLAAYGYG APEFEYGIYT MKCDVYSFGV VMLELLTGRK SYDKKRDRGE QFLVRWAIPQ
701: LHDIDALAKM VDPSLKGDYP AKSLSHFADV ISRCVQSEPE YRPLMSEVVQ DLSDMIQREH RRNDSNGDNQ YTGRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)