suba logo
AT3G24770.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CLAVATA3/ESR-RELATED 41
Curator
Summary (TAIR10)
Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE41 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE44 (At4g13195).
Computational
Description (TAIR10)
CLAVATA3/ESR-RELATED 41 (CLE41); BEST Arabidopsis thaliana protein match is: CLAVATA3/ESR-RELATED 44 (TAIR:AT4G13195.1); Has 25 Blast hits to 25 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT55eggNOG:ENOG411086KEMBL:AB028609EMBL:AY087469
EMBL:BT004087EMBL:BT020560EMBL:CP002686EnsemblPlants:AT3G24770
EnsemblPlants:AT3G24770.1entrez:822075GeneID:822075Genevisible:Q84W98
GO:GO:0001944GO:GO:0005615GO:GO:0010067GO:GO:0010087
GO:GO:0010089GO:GO:0010223GO:GO:0033612GO:GO:0045168
GO:GO:0048046GO:GO:0051301GO:GO:0090506Gramene:AT3G24770.1
hmmpanther:PTHR35301HOGENOM:HOG000090395InParanoid:Q84W98KEGG:ath:AT3G24770
OMA:REFGNDAPaxDb:Q84W98Pfam:Q84W98PhylomeDB:Q84W98
PRIDE:Q84W98PRO:PR:Q84W98Proteomes:UP000006548RefSeq:NP_566754.1
STRING:3702.AT3G24770.1TAIR:AT3G24770tair10-symbols:CLE41TMHMM:TMhelix
UniGene:At.37466UniProt:Q84W98
Coordinates (TAIR10) chr3:+:9046779..9047078
Molecular Weight (calculated) 11018.20 Da
IEP (calculated) 12.16
GRAVY (calculated) -0.39
Length 99 amino acids
Sequence (TAIR10)
(BLAST)
1: MATSNDQTNT KSSHSRTLLL LFIFLSLLLF SSLTIPMTRH QSTSMVAPFK RVLLESSVPA SSTMDLRPKA STRRSRTSRR REFGNDAHEV PSGPNPISN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)