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AT4G13195.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.910
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CLAVATA3/ESR-RELATED 44
Curator
Summary (TAIR10)
Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE44 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE41 (At3g24770).
Computational
Description (TAIR10)
CLAVATA3/ESR-RELATED 44 (CLE44); BEST Arabidopsis thaliana protein match is: CLAVATA3/ESR-RELATED 41 (TAIR:AT3G24770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12231EMBL:AL049751EMBL:AL161535EMBL:AY052261
EMBL:AY084742EMBL:AY618657EMBL:BT002641EMBL:CP002687
EnsemblPlants:AT4G13195EnsemblPlants:AT4G13195.1entrez:826934GeneID:826934
Genevisible:Q941C5GO:GO:0005615GO:GO:0010067GO:GO:0010087
GO:GO:0010089GO:GO:0033612GO:GO:0045168GO:GO:0048046
GO:GO:0090506Gramene:AT4G13195.1hmmpanther:PTHR35301hmmpanther:PTHR35301:SF1
HOGENOM:HOG000090395InParanoid:Q941C5IntAct:Q941C5KEGG:ath:AT4G13195
OMA:MATTIDQPaxDb:Q941C5PDB:2MIEPDBsum:2MIE
Pfam:Q941C5PhylomeDB:Q941C5PRIDE:Q941C5PRO:PR:Q941C5
Proteomes:UP000006548RefSeq:NP_567397.1STRING:3702.AT4G13195.1TAIR:AT4G13195
tair10-symbols:CLE44TMHMM:TMhelixUniGene:At.26420UniProt:Q941C5
Coordinates (TAIR10) chr4:-:7662664..7663002
Molecular Weight (calculated) 12523.10 Da
IEP (calculated) 12.35
GRAVY (calculated) -0.43
Length 112 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTIDQTSI KSLHFHQVIR LIITIIFLAF LFLIGPTSSM NHHLHESSSK NTMAPSKRFL LQPSTPSSST MKMRPTAHPR RSGTSSSSAR KRRREFRAEA
101: HEVPSGPNPI SN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)