suba logo
AT2G28660.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.841
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chloroplast-targeted copper chaperone protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chloroplast-targeted copper chaperone protein; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), Copper chaperone, chloroplast-targeted, predicted (InterPro:IPR016578); BEST Arabidopsis thaliana protein match is: Chloroplast-targeted copper chaperone protein (TAIR:AT3G53530.1); Has 1827 Blast hits to 1203 proteins in 102 species: Archae - 0; Bacteria - 68; Metazoa - 145; Fungi - 15; Plants - 1082; Viruses - 0; Other Eukaryotes - 517 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2608eggNOG:KOG1603EMBL:AY303948EMBL:BT029348
EMBL:CP002685EnsemblPlants:AT2G28660EnsemblPlants:AT2G28660.1entrez:817415
GeneID:817415GO:GO:0030001GO:GO:0046872Gramene:AT2G28660.1
hmmpanther:PTHR22814hmmpanther:PTHR22814:SF16HOGENOM:HOG000238702InterPro:IPR006121
KEGG:ath:AT2G28660OMA:DIFCSSPPfam:PF00403Pfscan:PS50846
PhylomeDB:Q7XZS3PROSITE:PS50846Proteomes:UP000006548RefSeq:NP_180434.2
SMR:Q7XZS3STRING:3702.AT2G28660.1SUPFAM:SSF55008TAIR:AT2G28660
UniGene:At.14471UniProt:Q7XZS3
Coordinates (TAIR10) chr2:+:12295419..12296944
Molecular Weight (calculated) 29003.30 Da
IEP (calculated) 10.79
GRAVY (calculated) -0.50
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFSDIFCSS PASTAVRHST LHHDGNVTGG RRSFQSHLRS QNPSKKKDKT VPCFSSEMPL IPIPRHLSCR NSFESPSGFR PKIASARGSD VQIRRKSSAD
101: VSDLRRSRSS LLSSSSRYLL KDHKSLKGDD KDLWLSSDRS KDLILYRDRN VTSSASSSSS SSSSSFSSSV TNVSSPAPST DDQVVVLRVS IHCKGCEGKV
201: RKHISKMEGV TSYTIDLATK KVTVVGKITP VGLVESISKV KFAQLWPSSS SPPFPHIPNY SLLKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)