suba logo
AT2G47260.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WRKY DNA-binding protein 23
Curator
Summary (TAIR10)
Encodes a member of WRKY Transcription Factor; Group I. Involved in nematode feeding site establishment.
Computational
Description (TAIR10)
WRKY DNA-binding protein 23 (WRKY23); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group IIc (InterPro:IPR017396); BEST Arabidopsis thaliana protein match is: WRKY family transcription factor (TAIR:AT3G62340.1); Has 3541 Blast hits to 3088 proteins in 202 species: Archae - 0; Bacteria - 3; Metazoa - 11; Fungi - 7; Plants - 3503; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
BioGrid:4674eggNOG:ENOG410IXGHeggNOG:ENOG410YRNPEMBL:AC002337
EMBL:AK117918EMBL:AY052647EMBL:AY084658EMBL:BT006238
EMBL:CP002685EnsemblPlants:AT2G47260EnsemblPlants:AT2G47260.1entrez:819339
Gene3D:2.20.25.80GeneID:819339Genevisible:O22900GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009624GO:GO:0009733
GO:GO:0043565Gramene:AT2G47260.1hmmpanther:PTHR31221hmmpanther:PTHR31221:SF23
HOGENOM:HOG000238090InParanoid:O22900IntAct:O22900InterPro:IPR003657
InterPro:IPR017396KEGG:ath:AT2G47260OMA:NSHANEYPaxDb:O22900
Pfam:O22900Pfam:PF03106Pfscan:PS50811PhylomeDB:O22900
PIR:A84913PIRSF:PIRSF038130PRIDE:O22900PRO:PR:O22900
PROSITE:PS50811ProteinModelPortal:O22900Proteomes:UP000006548RefSeq:NP_182248.1
SMART:SM00774SMR:O22900STRING:3702.AT2G47260.1SUPFAM:0050605
SUPFAM:SSF118290TAIR:AT2G47260tair10-symbols:ATWRKY23tair10-symbols:WRKY23
UniGene:At.24867UniProt:O22900
Coordinates (TAIR10) chr2:-:19405045..19406446
Molecular Weight (calculated) 37686.60 Da
IEP (calculated) 6.95
GRAVY (calculated) -0.81
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFTDFSKTS FYYPSSQSVW DFGDLAAAER HSLGFMELLS SQQHQDFATV SPHSFLLQTS QPQTQTQPSA KLSSSIIQAP PSEQLVTSKV ESLCSDHLLI
101: NPPATPNSSS ISSASSEALN EEKPKTEDNE EEGGEDQQEK SHTKKQLKAK KNNQKRQREA RVAFMTKSEV DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT
201: TASCNVKKRV ERSFRDPSTV VTTYEGQHTH ISPLTSRPIS TGGFFGSSGA ASSLGNGCFG FPIDGSTLIS PQFQQLVQYH HQQQQQELMS CFGGVNEYLN
301: SHANEYGDDN RVKKSRVLVK DNGLLQDVVP SHMLKEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)