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AT3G57600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G18450.1); Has 5751 Blast hits to 5635 proteins in 247 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 5730; Viruses - 2; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
BioGrid:10244eggNOG:ENOG410IJFHeggNOG:ENOG4111TVYEMBL:AK227217
EMBL:AL049660EMBL:AY087243EMBL:BT028945EMBL:CP002686
EnsemblPlants:AT3G57600EnsemblPlants:AT3G57600.1entrez:824929Gene3D:3.30.730.10
GeneID:824929Genevisible:Q9SVX5GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351Gramene:AT3G57600.1hmmpanther:PTHR31241
hmmpanther:PTHR31241:SF3HOGENOM:HOG000239781InParanoid:Q9SVX5InterPro:IPR001471
InterPro:IPR016177KEGG:ath:AT3G57600OMA:WNEQEETPaxDb:Q9SVX5
Pfam:PF00847Pfam:Q9SVX5Pfscan:PS51032PhylomeDB:Q9SVX5
PIR:T06760PRIDE:Q9SVX5PRINTS:PR00367PRO:PR:Q9SVX5
PROSITE:PS51032ProteinModelPortal:Q9SVX5Proteomes:UP000006548RefSeq:NP_191319.1
SMART:SM00380SMR:Q9SVX5STRING:3702.AT3G57600.1SUPFAM:SSF54171
TAIR:AT3G57600UniGene:At.34819UniProt:Q9SVX5
Coordinates (TAIR10) chr3:+:21332841..21333674
Molecular Weight (calculated) 31573.60 Da
IEP (calculated) 5.11
GRAVY (calculated) -0.87
Length 277 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKSSSMKQW KKGPARGKGG PQNALCQYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA EEAAMAYDEA ALKLYGHDAY LNLPHLQRNT RPSLSNSQRF
101: KWVPSRKFIS MFPSCGMLNV NAQPSVHIIQ QRLEELKKTG LLSQSYSSSS SSTESKTNTS FLDEKTSKGE TDNMFEGGDQ KKPEIDLTEF LQQLGILKDE
201: NEAEPSEVAE CHSPPPWNEQ EETGSPFRTE NFSWDTLIEM PRSETTTMQF DSSNFGSYDF EDDVSFPSIW DYYGSLD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)