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AT5G28490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF640)
Curator
Summary (TAIR10)
Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner.
Computational
Description (TAIR10)
LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 (LSH1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT3G04510.1); Has 311 Blast hits to 311 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:18214eggNOG:ENOG410J990eggNOG:ENOG41116RUEMBL:AF262039
EMBL:AY319947EMBL:BT010821EMBL:BT011304EMBL:CP002688
EnsemblPlants:AT5G28490EnsemblPlants:AT5G28490.1entrez:832941GeneID:832941
Genevisible:Q6NNI3GO:GO:0003677GO:GO:0005634GO:GO:0006355
GO:GO:0009299GO:GO:0009416GO:GO:0009637GO:GO:0009826
GO:GO:0009886GO:GO:0010114GO:GO:0010218Gramene:AT5G28490.1
hmmpanther:PTHR31165hmmpanther:PTHR31165:SF13HOGENOM:HOG000239606InParanoid:Q6NNI3
IntAct:Q6NNI3InterPro:IPR006936KEGG:ath:AT5G28490OMA:LISHQPN
PaxDb:Q6NNI3Pfam:PF04852Pfam:Q6NNI3Pfscan:PS51697
PhylomeDB:Q6NNI3PRIDE:Q6NNI3PRO:PR:Q6NNI3PROSITE:PS51697
Proteomes:UP000006548RefSeq:NP_198201.1STRING:3702.AT5G28490.1TAIR:AT5G28490
tair10-symbols:LSH1UniGene:At.49252UniProt:Q6NNI3
Coordinates (TAIR10) chr5:-:10454541..10455113
Molecular Weight (calculated) 21654.70 Da
IEP (calculated) 10.57
GRAVY (calculated) -0.94
Length 190 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLISHQPNK NPNSSTQLTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)