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AT2G42610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF640)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LIGHT SENSITIVE HYPOCOTYLS 10 (LSH10); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G07090.1); Has 309 Blast hits to 309 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II4XeggNOG:ENOG41119V3EMBL:AC007087EMBL:AF218765
EMBL:AK118714EMBL:AK119048EMBL:BT003740EMBL:CP002685
EMBL:EF597874EMBL:EF597875EMBL:EF597876EMBL:EF597877
EMBL:EF597878EMBL:EF597879EMBL:EF597880EMBL:EF597881
EMBL:EF597882EMBL:EF597883EMBL:EF597884EMBL:EF597885
EMBL:EF597886EMBL:EF597887EMBL:EF597888EMBL:EF597889
EMBL:EF597890EMBL:EF597891EMBL:EF597892EMBL:EF597893
EMBL:EF597894EMBL:EF597895EMBL:EF597896EMBL:EF597897
EnsemblPlants:AT2G42610EnsemblPlants:AT2G42610.1EnsemblPlants:AT2G42610.2entrez:818861
GeneID:818861Genevisible:Q9S7R3GO:GO:0003677GO:GO:0005634
GO:GO:0006355GO:GO:0009299GO:GO:0009886Gramene:AT2G42610.1
Gramene:AT2G42610.2hmmpanther:PTHR31165hmmpanther:PTHR31165:SF10HOGENOM:HOG000239606
InParanoid:Q9S7R3InterPro:IPR006936iPTMnet:Q9S7R3KEGG:ath:AT2G42610
OMA:TSANFQLPaxDb:Q9S7R3Pfam:PF04852Pfam:Q9S7R3
Pfscan:PS51697PhylomeDB:Q9S7R3PIR:A84856PRIDE:Q9S7R3
PRO:PR:Q9S7R3PROSITE:PS51697Proteomes:UP000006548RefSeq:NP_565978.1
RefSeq:NP_850374.1STRING:3702.AT2G42610.1TAIR:AT2G42610tair10-symbols:LSH10
UniGene:At.24332UniProt:Q9S7R3
Coordinates (TAIR10) chr2:+:17748005..17748538
Molecular Weight (calculated) 19792.50 Da
IEP (calculated) 9.91
GRAVY (calculated) -0.88
Length 177 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)