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AT4G24540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 24
Curator
Summary (TAIR10)
Encodes a MADS-box protein involved in flowering. Regulates the expression of SOC1 and is also upregulated by SOC1. Binds with IMK3 kinase domain. Phosphorylated by IMK3; likely to be a target for IMK3 kinase domain.
Computational
Description (TAIR10)
AGAMOUS-like 24 (AGL24); FUNCTIONS IN: sequence-specific DNA binding, protein homodimerization activity, protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: floral whorl development, maintenance of floral meristem identity, maintenance of inflorescence meristem identity, floral meristem determinacy, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT2G22540.1); Has 7220 Blast hits to 7219 proteins in 914 species: Archae - 3; Bacteria - 10; Metazoa - 648; Fungi - 309; Plants - 6171; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).
Protein Annotations
BioGrid:13845eggNOG:COG5068eggNOG:KOG0014EMBL:AB493697
EMBL:AF005158EMBL:AF005159EMBL:AL035356EMBL:AL161561
EMBL:BT025171EMBL:CP002687EnsemblPlants:AT4G24540EnsemblPlants:AT4G24540.1
entrez:828556GeneID:828556Genevisible:O82794GO:GO:0000060
GO:GO:0003700GO:GO:0005634GO:GO:0005737GO:GO:0006351
GO:GO:0009739GO:GO:0010077GO:GO:0010220GO:GO:0030154
GO:GO:0043565GO:GO:0045893GO:GO:0046982GO:GO:0048438
GO:GO:0048510Gramene:AT4G24540.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF179
HOGENOM:HOG000155301InParanoid:O82794IntAct:O82794InterPro:IPR002100
InterPro:IPR002487KEGG:ath:AT4G24540ncoils:CoilOMA:SEKKGEC
PaxDb:O82794Pfam:O82794Pfam:PF00319Pfam:PF01486
Pfscan:PS50066Pfscan:PS51297PhylomeDB:O82794PIR:T05580
PIR:T51827PRIDE:O82794PRINTS:PR00404PRO:PR:O82794
PROSITE:PS00350PROSITE:PS50066PROSITE:PS51297ProteinModelPortal:O82794
Proteomes:UP000006548RefSeq:NP_194185.1scanprosite:PS00350SMART:SM00432
SMR:O82794STRING:3702.AT4G24540.1SUPFAM:SSF55455TAIR:AT4G24540
tair10-symbols:AGL24UniGene:At.4507UniProt:O82794
Coordinates (TAIR10) chr4:-:12671160..12673645
Molecular Weight (calculated) 25065.10 Da
IEP (calculated) 8.47
GRAVY (calculated) -0.61
Length 220 amino acids
Sequence (TAIR10)
(BLAST)
001: MAREKIRIKK IDNITARQVT FSKRRRGIFK KADELSVLCD ADVALIIFSA TGKLFEFSSS RMRDILGRYS LHASNINKLM DPPSTHLRLE NCNLSRLSKE
101: VEDKTKQLRK LRGEDLDGLN LEELQRLEKL LESGLSRVSE KKGECVMSQI FSLEKRGSEL VDENKRLRDK LETLERAKLT TLKEALETES VTTNVSSYDS
201: GTPLEDDSDT SLKLGLPSWE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)