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AT5G62960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJAFeggNOG:ENOG41123NREMBL:BT010867EMBL:BT010994
EMBL:CP002688EnsemblPlants:AT5G62960EnsemblPlants:AT5G62960.1entrez:836416
GeneID:836416GO:GO:0016021Gramene:AT5G62960.1hmmpanther:PTHR12242
hmmpanther:PTHR12242:SF3HOGENOM:HOG000242492KEGG:ath:AT5G62960OMA:LVINMHS
PhylomeDB:Q6NPD1Proteomes:UP000006548RefSeq:NP_201101.2STRING:3702.AT5G62960.1
TAIR:AT5G62960TMHMM:TMhelixUniGene:At.29024UniProt:Q6NPD1
Coordinates (TAIR10) chr5:+:25269444..25271533
Molecular Weight (calculated) 40142.40 Da
IEP (calculated) 7.04
GRAVY (calculated) 0.32
Length 347 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSSSSSLLS PSSYTELKDA WHPSTTANTT ESSYWFNWRV MICCIWMAIA TVITAFLIFK YEGFRRKRSD VGEVDGGEKE WSGNVYEDET WRPCLRNIHP
101: AWLLAFRVVA FFVLLVMLIV IGLVDGPTIF FYYTQWTFGL ITLYFGLGSL LSLHGCYQYN KRAAGDRVDS IEAIDSERAR SKGADNTIQQ SQYSSNPAGF
201: WGYVFQIIFQ MNAGAVLLTD CVFWFIIVPF LEIHDYSLNV LVINMHSLNA IFLLGDAALN SLSFPCFRIA YFFFWTIAYV IFQWALHSLV HIWWPYPFLD
301: LSSHYAPLWY FSVAVMHLPC YGAFALLVKL KHRLLQRWFP ESYQSPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)