AT1G60030.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : nucleobase-ascorbate transporter 7 | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
nucleobase-ascorbate transporter 7 (NAT7); FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: nucleobase-ascorbate transporter 8 (TAIR:AT1G10540.1); Has 9221 Blast hits to 9205 proteins in 1877 species: Archae - 67; Bacteria - 7547; Metazoa - 349; Fungi - 126; Plants - 456; Viruses - 1; Other Eukaryotes - 675 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:22113993..22116648 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 58511.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.79 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.45 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 538 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAGGGGGGGG VAPPLKHDGL EPHPVKDQLS SISYCITSPP PWPEAILLGF QHYLVMLGTT VLIPTYLVPQ MGGGNEEKAK MVQTLLFVSG LNTLLQSFFG 101: TRLPAVIGGS YTYVPTTLSI ILAGRYSDIL DPQEKFKRIM RGIQGALIVA SILQIVVGFS GLWRNVVRLL SPLSAVPLVA LAGFGLYEHG FPLLAKCIEI 201: GLPEIILLLL FSQYIPHLIR GERQVFHRFA VIFSVVIVWI YAHLLTVGGA YKNTGVNTQT SCRTDRSGLI SGSPWIRVPY PFQWGPPTFH AGEAFAMMAV 301: SFVSLIESTG TYIVVSRFAS ATPPPPSVLS RGVGWQGVGV LLCGLFGAGN GASVSVENAG LLALTRVGSR RVVQISAGFM IFFSILGKFG AIFASIPAPV 401: VAALHCLFFA YVGAGGLSLL QFCNLNSFRT KFILGFSVFM GLSIPQYFNQ YTAVNKYGPV HTHARWFNDM INVPFSSKAF VAGILAFFLD VTMSSKDSAT 501: RKDRGMFWWD RFMSFKSDTR SEEFYSLPFN LNKYFPSV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)