AT3G23590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.461 cytosol 0.325 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : REF4-related 1 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
REF4-related 1 (RFR1); BEST Arabidopsis thaliana protein match is: reduced epidermal fluorescence 4 (TAIR:AT2G48110.1); Has 143 Blast hits to 139 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:8467638..8473469 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 143102.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.11 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.16 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1309 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVVPGRRTVW DCVIELTKMA QENCVDPRLW ASQLSSNLKF FAVELPSTEL AEVIVSYICW DNNVPIVWKF LERAMALKLV SPLVVLALLA DRVVPTRSTQ 0101: QAAYRIYLEL LKRNMFTIKD HISGPHYQKV MISVSNILRL SELFDLDTSK PGVLLVEFVF KMVSQLLDAA LSDEGLLELS QDSSSQWLVK SQDMEIDAPE 0201: RYNEKTGSLE KLQSLNTIMA IELIAEFLRN TVIARLLYLV SSNRASKWHE FVQKVQLLGE NSSALKHSKV LNSGDLLQLI SNRRFGYSYD SKVTSARKSN 0301: AIVDFGSLSS YAGLCHGASL SSLWLPLDLV FEDAMDGYQV NPTSAIEIIT GLAKTLKEIN GSTWHDTFLG LWIAALRLVQ RERDPIEGPI PRLDTRLCMS 0401: LCIVPLVVAN LIEEGKYESV MEKLRDDLVT SLQVLGDFPG LLAPPKCVVS AANKAATKAI LFLSGGNVGK SCFDVINMKD MPVNCSGNMR HLIVEACIAR 0501: NILDMSAYSW PGYVNGRINQ IPQSLPNEVP CWSSFVKGAP LNAAMVNTLV SVPASSLAEL EKLFEVAVKG SDDEKISAAT VLCGASLTRG WNIQEHTVEY 0601: LTRLLSPPVP ADYSRAENHL IGYACMLNVV IVGIGSVDSI QIFSLHGMVP QLACSLMPIC EEFGSYTPSV SWTLPSGEAI SAYSVFSNAF TLLLKLWRFN 0701: HPPIEHGVGD VPTVGSQLTP EHLLSVRNSY LVSSEILDRD RNRKRLSEVA RAASCQPVFV DSFPKLKVWY RQHQRCIAAT LSGLTHGSPV HQTVEALLNM 0801: TFGKVRGSQT LNPVNSGTSS SSGAASEDSN IRPEFPAWDI LKAVPYVVDA ALTACTHGRL SPRQLATGLK DLADFLPASL ATIVSYFSAE VSRGVWKPVF 0901: MNGVDWPSPA TNLSTVEEYI TKILATTGVD IPSLAPGGSS PATLPLPLAA FVSLTITYKI DKASERFLNL AGPALECLAA GCPWPCMPIV ASLWTQKAKR 1001: WFDFLVFSAS RTVFLHNQDA VIQLLRNCFS ATLGLNAAPM SNDGGVGALL GHGFGSHFYG GISPVAPGIL YLRMYRALRD TVSVSEEILS LLIHSVEDIA 1101: QNRLSKEKLE KLKTVKNGSR YGQSSLATAM TQVKLAASLS ASLVWLTGGL GVVHVLIKET IPSWFLSTDK SDREQGPSDL VAELRGHALA YFVVLCGALT 1201: WGVDSRSSAS KRRRQAILGS HLEFIASALD GKISVGCETA TWRTYISGLV SLMVSCLPLW VTEIDTEVLK SLSNGLRKWG KDELAIVLLS LGGLKTMDYA 1301: ADFIIHLRS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)