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AT4G27730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : oligopeptide transporter 1
Curator
Summary (TAIR10)
oligopeptide transporter
Computational
Description (TAIR10)
oligopeptide transporter 1 (OPT6); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 9 (TAIR:AT5G53510.1); Has 1157 Blast hits to 1133 proteins in 115 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 800; Plants - 327; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNZCeggNOG:KOG2262EMBL:AL035602EMBL:AL161571
EMBL:AY142525EMBL:CP002687EnsemblPlants:AT4G27730EnsemblPlants:AT4G27730.1
entrez:828887GeneID:828887Genevisible:Q9T095GO:GO:0005886
GO:GO:0015031GO:GO:0015833GO:GO:0016020GO:GO:0016021
GO:GO:0055085Gramene:AT4G27730.1hmmpanther:PTHR22601hmmpanther:PTHR22601:SF22
HOGENOM:HOG000166970InParanoid:Q9T095InterPro:IPR004648InterPro:IPR004813
KEGG:ath:AT4G27730OMA:WLMEEIPPaxDb:Q9T095Pfam:PF03169
Pfam:Q9T095PhylomeDB:Q9T095PIR:T05878PRIDE:Q9T095
PRO:PR:Q9T095ProteinModelPortal:Q9T095Proteomes:UP000006548RefSeq:NP_194503.1
STRING:3702.AT4G27730.1TAIR:AT4G27730tair10-symbols:ATOPT6tair10-symbols:OPT6
TIGRfam:TIGR00727TIGRfam:TIGR00728TIGRFAMs:TIGR00727TIGRFAMs:TIGR00728
TMHMM:TMhelixUniGene:At.21328UniGene:At.32073UniProt:Q9T095
Coordinates (TAIR10) chr4:-:13834024..13836468
Molecular Weight (calculated) 82365.60 Da
IEP (calculated) 9.05
GRAVY (calculated) 0.52
Length 736 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEIATEFTP VMDDDDDRCV VPEVELTVPK TDDSTLPVLT FRMWVLGIGA CIVLSFINQF FWYRTMPLSI TGISAQIAVV PLGHLMARVL PTKRFLEGTR
101: FQFTLNPGAF NVKEHVLITI FANSGAGSVY ATHILSAIKL YYKRSLPFLP AFLVMITTQI LGFGWAGLFR KHLVEPGEMW WPSNLVQVSL FGALHEKEKK
201: SRGGMSRTQF FLIVLVASFA YYIFPGYLFT MLTSISWVCW LNPKSILVNQ LGSGEHGLGI GSIGFDWVTI SAYLGSPLAS PLFASVNVAI GFVLVMYIVT
301: PVCYWLNIYD AKTFPIFSSQ LFMGNGSRYD VLSIIDSKFH LDRVVYSRTG SINMSTFFAV TYGLGFATLS ATIVHVLVFN GSDLWKQTRG AFQKNKKMDI
401: HTRIMKKNYR EVPLWWFLVI LLLNIALIMF ISVHYNATVQ LPWWGVLLAC AIAISFTPLI GVIAATTNQA PGLNIITEYV IGYIYPERPV ANMCFKVYGY
501: ISMTQALTFI SDFKLGHYMK IPPRSMFMAQ VAGTLVAVVV YTGTAWWLME EIPHLCDTSL LPSDSQWTCP MDRVFFDASV IWGLVGPRRV FGDLGEYSNV
601: NWFFLVGAIA PLLVWLATKM FPAQTWIAKI HIPVLVGATA MMPPATAVNF TSWLIVAFIF GHFIFKYRRV WWTKYNYVLS GGLDAGSAFM TILLFLALGR
701: KGIEVQWWGN SGDRDTCPLA SCPTAKGVVV KGCPVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)