AT4G27730.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : oligopeptide transporter 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
oligopeptide transporter | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
oligopeptide transporter 1 (OPT6); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 9 (TAIR:AT5G53510.1); Has 1157 Blast hits to 1133 proteins in 115 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 800; Plants - 327; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:13834024..13836468 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 82365.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.05 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.52 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 736 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGEIATEFTP VMDDDDDRCV VPEVELTVPK TDDSTLPVLT FRMWVLGIGA CIVLSFINQF FWYRTMPLSI TGISAQIAVV PLGHLMARVL PTKRFLEGTR 101: FQFTLNPGAF NVKEHVLITI FANSGAGSVY ATHILSAIKL YYKRSLPFLP AFLVMITTQI LGFGWAGLFR KHLVEPGEMW WPSNLVQVSL FGALHEKEKK 201: SRGGMSRTQF FLIVLVASFA YYIFPGYLFT MLTSISWVCW LNPKSILVNQ LGSGEHGLGI GSIGFDWVTI SAYLGSPLAS PLFASVNVAI GFVLVMYIVT 301: PVCYWLNIYD AKTFPIFSSQ LFMGNGSRYD VLSIIDSKFH LDRVVYSRTG SINMSTFFAV TYGLGFATLS ATIVHVLVFN GSDLWKQTRG AFQKNKKMDI 401: HTRIMKKNYR EVPLWWFLVI LLLNIALIMF ISVHYNATVQ LPWWGVLLAC AIAISFTPLI GVIAATTNQA PGLNIITEYV IGYIYPERPV ANMCFKVYGY 501: ISMTQALTFI SDFKLGHYMK IPPRSMFMAQ VAGTLVAVVV YTGTAWWLME EIPHLCDTSL LPSDSQWTCP MDRVFFDASV IWGLVGPRRV FGDLGEYSNV 601: NWFFLVGAIA PLLVWLATKM FPAQTWIAKI HIPVLVGATA MMPPATAVNF TSWLIVAFIF GHFIFKYRRV WWTKYNYVLS GGLDAGSAFM TILLFLALGR 701: KGIEVQWWGN SGDRDTCPLA SCPTAKGVVV KGCPVF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)