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AT5G64410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23110452 (2012): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:17869214 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : oligopeptide transporter 4
Curator
Summary (TAIR10)
oligopeptide transporter
Computational
Description (TAIR10)
oligopeptide transporter 4 (OPT4); CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 2 (TAIR:AT1G09930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNZCeggNOG:KOG2262EMBL:AK227021EnsemblPlants:AT5G64410
EnsemblPlants:AT5G64410.1entrez:836562ExpressionAtlas:Q0WUW4GeneID:836562
GO:GO:0016021GO:GO:0055085Gramene:AT5G64410.1hmmpanther:PTHR22601
hmmpanther:PTHR22601:SF11InterPro:IPR004648InterPro:IPR004813KEGG:ath:AT5G64410
OMA:KWITLINPaxDb:Q0WUW4Pfam:PF03169Pfam:Q9FME8
PhylomeDB:Q0WUW4PRIDE:Q0WUW4ProteinModelPortal:Q0WUW4RefSeq:NP_201246.1
STRING:3702.AT5G64410.1TAIR:AT5G64410tair10-symbols:ATOPT4tair10-symbols:OPT4
TIGRfam:TIGR00727TIGRfam:TIGR00728TIGRFAMs:TIGR00727TIGRFAMs:TIGR00728
TMHMM:TMhelixUniGene:At.7393UniProt:Q0WUW4UniProt:Q9FME8
Coordinates (TAIR10) chr5:-:25750921..25754974
Molecular Weight (calculated) 81797.00 Da
IEP (calculated) 8.85
GRAVY (calculated) 0.43
Length 729 amino acids
Sequence (TAIR10)
(BLAST)
001: MATADEFSDE DTSPIEEVRL TVTNTDDPTL PVWTFRMWFL GLISCSLLSF LNQFFSYRTE PLVITQITVQ VATLPIGHFL AKVLPKTRFG LPGCGSARFS
101: LNPGPFNMKE HVLISIFANA GSAFGSGSAY AVGIITIIKA FYGRSISFIA GWLLIITTQV LGYGWAGLLR KYVVEPAHMW WPSTLVQVSL FRALHEKDDQ
201: RMTRAKFFVI ALVCSFGWYI VPGYLFTTLT SISWVCWAFP RSVTAQQIGS GMRGLGLGAF TLDWTAVASF LFSPLISPFF AIANVFIGYV LLIYFVLPLA
301: YWGFDSYNAT RFPIFSSHLF TSVGNTYDIP AIVNDNFELD LAKYEQQGRI NLSMFFALTY GLGFATIAST LTHVALFYGK EISERFRVSY KGKEDIHTRL
401: MKRYKDIPSW WFYSMLAATL LISLALCVFL NDEVQMPWWG LVFASAMAFV FTLPISIITA TTNQTPGLNI ITEYAMGLIY PGRPIANVCF KVYGYMSMAQ
501: AVSFLNDFKL GHYMKIPPRS MFLVQFIGTI LAGTINITVA WWQLNSIKNI CQEELLPPNS PWTCPGDRVF FDASVIWGLV GPKRIFGSQG NYAAMNWFFL
601: GGALGPVIVW SLHKAFPKRS WIPLVNLPVL LGATAMMPPA TAVNYNSWIL VGTIFNLFVF RYRKSWWQRY NYVLSAAMDA GVAFMAVLLY FSVGMEEKSL
701: DWWGTRGEHC DLAKCPTARG VIVDGCPVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)