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AT5G55930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : oligopeptide transporter 1
Curator
Summary (TAIR10)
oligopeptide transporter
Computational
Description (TAIR10)
oligopeptide transporter 1 (OPT1); CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 5 (TAIR:AT4G26590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20935eggNOG:ENOG410XNZCeggNOG:KOG2262EMBL:AB026659
EMBL:AY070725EMBL:BT004528EMBL:CP002688EnsemblPlants:AT5G55930
EnsemblPlants:AT5G55930.1entrez:835691GeneID:835691Genevisible:Q9FG72
GO:GO:0015031GO:GO:0015833GO:GO:0016020GO:GO:0016021
GO:GO:0055085Gramene:AT5G55930.1hmmpanther:PTHR22601hmmpanther:PTHR22601:SF8
HOGENOM:HOG000166970InParanoid:Q9FG72InterPro:IPR004648InterPro:IPR004813
KEGG:ath:AT5G55930OMA:AFQNNDIPaxDb:Q9FG72Pfam:PF03169
Pfam:Q9FG72PhylomeDB:Q9FG72PRIDE:Q9FG72PRO:PR:Q9FG72
ProteinModelPortal:Q9FG72Proteomes:UP000006548RefSeq:NP_200404.1STRING:3702.AT5G55930.1
TAIR:AT5G55930tair10-symbols:ATOPT1tair10-symbols:OPT1TIGRfam:TIGR00727
TIGRfam:TIGR00728TIGRFAMs:TIGR00727TIGRFAMs:TIGR00728TMHMM:TMhelix
UniGene:At.20183UniGene:At.49180UniProt:Q9FG72
Coordinates (TAIR10) chr5:+:22652988..22655827
Molecular Weight (calculated) 85353.00 Da
IEP (calculated) 8.47
GRAVY (calculated) 0.36
Length 755 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSVFDEHKP SDDSHESKIV INGEEEVLEE ENDNPIEEVR LTVPITDDPT LPVLTFRTWT LGLFSCILLA FVNQFFGFRS NQLWVSSVAA QIVTLPLGKL
101: MAKTLPTKKF GFPGTNWSWS FNPGPFNMKE HVLITIFANT GAGGVYATSI ITIVKAFYNR QLNVAAAMLL TQTTQLLGYG WAGIFRKFLV DSPYMWWPSN
201: LVQVSLFRAL HEKEDLQKGQ QTRFRFFIIV FCVSFAYYII PGYLFPSISA ISFVCWIWKS SVTAQIVGSG LKGLGIGSFG LDWSTVAGFL GSPLAVPFFA
301: IANFFGGFFI FLYIVLPIFY WTNAYDAQKF PFYTSHTFDQ TGHTYNITRI LNEKNFDINL DAYNGYSKLY LSVMFALLYG LSFGSLCATI SHVALYDGKF
401: IWGMWKKAKT ATKDKYGDVH SRLMKKNYQS VPQWWFIAVL VISFAFALYA CEGFDKQLQL PWWGLILACA IALFFTLPIG VIQATTNQQM GLNVITELII
501: GYLYPGKPLA NVAFKTYGYI SMSQALYFVG DFKLGHYMKI PPRSMFIVQL VATVVASTVC FGTTWWLITS VENICNVDLL PVGSPWTCPG DEVFYNASII
601: WGVIGPGRMF TKEGIYPGMN WFFLIGLLAP VPFWYLSKKF PEKKWLKQIH VPLIFSAVSA MPQAKAVHYW SWAIVGVVFN YYIFRRFKTW WARHNYILSA
701: ALDAGTAIMG VLIFFAFQNN DISLPDWWGL ENSDHCPLAH CPLAKGVVVE GCPVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)