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AT2G41990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.837
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G35170.1); Has 172 Blast hits to 168 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIN0eggNOG:ENOG410YEA4EMBL:BT024714EMBL:CP002685
EMBL:U90439EnsemblPlants:AT2G41990EnsemblPlants:AT2G41990.1entrez:818799
GeneID:818799GO:GO:0016021Gramene:AT2G41990.1hmmpanther:PTHR31852
hmmpanther:PTHR31852:SF8HOGENOM:HOG000240810InterPro:IPR004864KEGG:ath:AT2G41990
OMA:VEKMSFGPfam:PF03168PhylomeDB:P93747PIR:F84848
Proteomes:UP000006548RefSeq:NP_181730.1TAIR:AT2G41990TMHMM:TMhelix
UniGene:At.28028UniGene:At.68133UniProt:P93747
Coordinates (TAIR10) chr2:+:17527396..17528527
Molecular Weight (calculated) 33114.70 Da
IEP (calculated) 9.21
GRAVY (calculated) -0.10
Length 297 amino acids
Sequence (TAIR10)
(BLAST)
001: MHAKTDSEAT SIDAAALSPP RSAIRPLYYV QSPSNHDVEK MSFGSGCSLM GSPTHPHYYH CSPIHHSRES STSRFSDRAL LSYKSIRERR RYINDGDDKT
101: DGGDDDDPFR NVRLYVWLLL SVIFLFTVFS LILWGASKSY PPKVTVKGML VRDLNLQAGN DLSGVPTDML SLNSTVRIYY RNPSTFFAVH VTASPLLLHY
201: SNLLLSSGEM NKFTVGRNGE TNVVTVVQGH QIPLYGGVSF HLDTLSLPLN LTIVLHSKAY ILGRLVTSKF YTRIICSFTL DANHLPKSIS LLRSCIP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)