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AT1G24530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.524
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G24130.1); Has 47444 Blast hits to 22226 proteins in 799 species: Archae - 42; Bacteria - 6792; Metazoa - 17370; Fungi - 11016; Plants - 5872; Viruses - 0; Other Eukaryotes - 6352 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ISIReggNOG:ENOG410YCHWEMBL:AC000103EMBL:AY045973
EMBL:AY079324EMBL:CP002684EnsemblPlants:AT1G24530EnsemblPlants:AT1G24530.1
entrez:839068Gene3D:2.130.10.10GeneID:839068GO:GO:0005886
Gramene:AT1G24530.1hmmpanther:PTHR22844hmmpanther:PTHR22844:SF199HOGENOM:HOG000236376
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR020472
KEGG:ath:AT1G24530OMA:ASDLRCKPfam:PF00400Pfscan:PS50082
Pfscan:PS50294PhylomeDB:Q9FYL1PRINTS:PR00320PROSITE:PS50082
PROSITE:PS50294Proteomes:UP000006548RefSeq:NP_564219.1SMART:SM00320
SMR:Q9FYL1STRING:3702.AT1G24530.1SUPFAM:SSF50978TAIR:AT1G24530
UniGene:At.15901UniProt:Q9FYL1
Coordinates (TAIR10) chr1:+:8693287..8694543
Molecular Weight (calculated) 45946.50 Da
IEP (calculated) 9.94
GRAVY (calculated) -0.28
Length 418 amino acids
Sequence (TAIR10)
(BLAST)
001: MRVISKLFDS DRRRIPKSPK HLDSGESATS SSSLSDVTTG SSSLHSSLSL QTLPSVPSLQ KIPSTTVTVS HSVTSSFKLR ERSLPVTCLA VNGGYLFAVS
101: GHEVSIYDRD MCAHLDTFNG QDPFSGTVKS VGFSGEKIFT AHQDGKIGVW KLTAKSGYKQ LTTLPTLNDR LRRFALPKNY VQVRRHKKRL WIEHADAVTA
201: LAVSDGFIYS VSWDKTLKIW RASDLRCKES IKAHDDAVNA IAVSTNGTVY TGSADRRIRV WAKPTGEKRH TLVATLEKHK SAVNALALND DGSVLFSGSC
301: DRSILVWERE DTSNYMAVRG ALRGHDKAIL SLFNVSDLLL SGSADRTVRI WRRGPDSSYS CLEVLSGHTK PVKSLAAVRE KELDDVVSII SGSLDGEVKC
401: WKVSVTKPDN SFYTNLVQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)