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AT3G14230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : related to AP2 2
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational
Description (TAIR10)
related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6244 Blast hits to 5852 proteins in 259 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6195; Viruses - 4; Other Eukaryotes - 43 (source: NCBI BLink).
Protein Annotations
BioGrid:5977eggNOG:ENOG410IWFMeggNOG:ENOG410YERPEMBL:AB022220
EMBL:AF003095EMBL:AY054539EMBL:AY085580EMBL:BT000374
EMBL:CP002686EnsemblPlants:AT3G14230EnsemblPlants:AT3G14230.1EnsemblPlants:AT3G14230.3
entrez:820643ExpressionAtlas:Q9LUM4Gene3D:3.30.730.10GeneID:820643
Genevisible:Q9LUM4GO:GO:0001666GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009873GO:GO:0010468
hmmpanther:PTHR31190hmmpanther:PTHR31190:SF27HOGENOM:HOG000237624InParanoid:Q9LUM4
InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT3G14230KO:K09286
OMA:EINFMLEPaxDb:Q9LUM4Pfam:PF00847Pfam:Q9LUM4
Pfscan:PS51032PhylomeDB:Q9LUM4PRIDE:Q9LUM4PRINTS:PR00367
PRO:PR:Q9LUM4PROSITE:PS51032ProteinModelPortal:Q9LUM4Proteomes:UP000006548
RefSeq:NP_566482.1RefSeq:NP_850582.1RefSeq:NP_850583.1SMART:SM00380
SMR:Q9LUM4STRING:3702.AT3G14230.1SUPFAM:SSF54171TAIR:AT3G14230
tair10-symbols:RAP2.2UniGene:At.25146UniProt:Q9LUM4
Coordinates (TAIR10) chr3:-:4737616..4739000
Molecular Weight (calculated) 42528.00 Da
IEP (calculated) 4.65
GRAVY (calculated) -0.77
Length 379 amino acids
Sequence (TAIR10)
(BLAST)
001: MCGGAIISDF IPPPRSLRVT NEFIWPDLKN KVKASKKRSN KRSDFFDLDD DFEADFQGFK DDSAFDCEDD DDVFVNVKPF VFTATTKPVA SAFVSTGIYL
101: VGSAYAKKTV ESAEQAEKSS KRKRKNQYRG IRQRPWGKWA AEIRDPRKGS REWLGTFDTA EEAARAYDAA ARRIRGTKAK VNFPEEKNPS VVSQKRPSAK
201: TNNLQKSVAK PNKSVTLVQQ PTHLSQQYCN NSFDNSFGDM SFMEEKPQMY NNQFGLTNSF DAGGNNGYQY FSSDQGSNSF DCSEFGWSDH GPKTPEISSM
301: LVNNNEASFV EETNAAKKLK PNSDESDDLM AYLDNALWDT PLEVEAMLGA DAGAVTQEEE NPVELWSLDE INFMLEGDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)