AT1G79740.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.467 nucleus 0.346 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : hAT transposon superfamily | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:30004367..30006715 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73763.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.13 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 651 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVREKDICWE YAEKLDGNKV KCKFCSRVLN GGISRLKHHL SRLPSKGVNP CAKVRDDVTD RVRSILSAKD DPPITNKYKP PPPLSPPFDA PASKLVFPSS 101: PPNAQDIAER SISLFFFENK IDFAVARSPS YHHMLDAVAK CGPGFVAPSP KTEWLDRVKS DISLQLKDTE KEWVTTGCTI IAEAWTDNKS RALINFSVSS 201: PSRIFFHKSV DASSYFKNSK CLADLFDSVI QDIGQEHIVQ IIMDNSFCYT GISNHLLQNY ATIFVSPCAS QCLNIILEEF SKVDWVNQCI SQAQVISKFV 301: YNNSPVLDLL RKLTGGQDII RSGVTRSVSN FLSLQSMMKQ KARLKHMFNC PEYTTNTNKP QSISCVNILE DNDFWRAVEE SVAISEPILK VLREVSTGKP 401: AVGSIYELMS KAKESIRTYY IMDENKHKVF SDIVDTNWCE HLHSPLHAAA AFLNPSIQYN PEIKFLTSLK EDFFKVLEKL LPTSDLRRDI TNQIFTFTRA 501: KGMFGCNLAM EARDSVSPGL WWEQFGDSAP VLQRVAIRIL SQVCSGYNLE RQWSTFQQMH WERRNKIDRE ILNKLAYVNQ NLKLGRMITL ETDPIALEDI 601: DMMSEWVEEA ENPSPAQWLD RFGTALDGGD LNTRQFGGAI FSANDHNIFG L |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)