AT3G43920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : dicer-like 3 | ||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a ribonuclease III family protein that is required for endogenous RDR2-dependent siRNA (but not miRNA) formation. | ||||||||||||||||
| Computational Description (TAIR10) |
dicer-like 3 (DCL3); CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: dicer-like 4 (TAIR:AT5G20320.1); Has 13386 Blast hits to 8472 proteins in 2623 species: Archae - 174; Bacteria - 7922; Metazoa - 1543; Fungi - 728; Plants - 598; Viruses - 37; Other Eukaryotes - 2384 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:15753548..15760830 | ||||||||||||||||
| Molecular Weight (calculated) | 172023.00 Da | ||||||||||||||||
| IEP (calculated) | 6.23 | ||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||
| Length | 1531 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL 0101: QCCEIRALVN LKVEEYFGAK GVDKWTSQRW DEEFSKHDVL VMTPQILLDV LRSAFLKLEM VCLLIIDECH HTTGNHPYAK LMKIFNPEER EGVEKFATTV 0201: KEGPILYNPS PSCSLELKEK LETSHLKFDA SLRRLQELGK DSFLNMDNKF ETYQKRLSID YREILHCLDN LGLICAHLAA EVCLEKISDT KEESETYKEC 0301: SMVCKEFLED ILSTIGVYLP QDDKSLVDLQ QNHLSAVISG HVSPKLKELF HLLDSFRGDK QKQCLILVER IITAKVIERF VKKEASLAYL NVLYLTENNP 0401: STNVSAQKMQ IEIPDLFQHG KVNLLFITDV VEEGFQVPDC SCMVCFDLPK TMCSYSQSQK HAKQSNSKSI MFLERGNPKQ RDHLHDLMRR EVLIQDPEAP 0501: NLKSCPPPVK NGHGVKEIGS MVIPDSNITV SEEAASTQTM SDPPSRNEQL PPCKKLRLDN NLLQSNGKEK VASSKSKSSS SAAGSKKRKE LHGTTCANAL 0601: SGTWGENIDG ATFQAYKFDF CCNISGEVYS SFSLLLESTL AEDVGKVEMD LYLVRKLVKA SVSPCGQIRL SQEELVKAKY FQQFFFNGMF GKLFVGSKSQ 0701: GTKREFLLQT DTSSLWHPAF MFLLLPVETN DLASSATIDW SAINSCASIV EFLKKNSLLD LRDSDGNQCN TSSGQEVLLD DKMEETNLIH FANASSDKNS 0801: LEELVVIAIH TGRIYSIVEA VSDSSAMSPF EVDASSGYAT YAEYFNKKYG IVLAHPNQPL MKLKQSHHAH NLLVDFNEEM VVKTEPKAGN VRKRKPNIHA 0901: HLPPELLARI DVPRAVLKSI YLLPSVMHRL ESLMLASQLR EEIDCSIDNF SISSTSILEA VTTLTCPESF SMERLELLGD SVLKYVASCH LFLKYPDKDE 1001: GQLSRQRQSI ISNSNLHRLT TSRKLQGYIR NGAFEPRRWT APGQFSLFPV PCKCGIDTRE VPLDPKFFTE NMTIKIGKSC DMGHRWVVSK SVSDCAEALI 1101: GAYYVSGGLS ASLHMMKWLG IDVDFDPNLV VEAINRVSLR CYIPKEDELI ELERKIQHEF SAKFLLKEAI THSSLRESYS YERLEFLGDS VLDFLITRHL 1201: FNTYEQTGPG EMTDLRSACV NNENFAQVAV KNNLHTHLQR CATVLETQIN DYLMSFQKPD ETGRSIPSIQ GPKALGDVVE SIAGALLIDT RLDLDQVWRV 1301: FEPLLSPLVT PDKLQLPPYR ELNELCDSLG YFFRVKCSND GVKAQATIQL QLDDVLLTGD GSEQTNKLAL GKAASHLLTQ LEKRNISRKT SLGDNQSSMD 1401: VNLACNHSDR ETLTSETTEI QSIVIPFIGP INMKKGGPRG TLHEFCKKHL WPMPTFDTSE EKSRTPFEFI DGGEKRTSFS SFTSTITLRI PNREAVMYAG 1501: EARPDKKSSF DSAVVELLYE LERRKIVIIQ K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)