suba logo
AT4G11130.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-dependent RNA polymerase 2
Curator
Summary (TAIR10)
Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004).
Computational
Description (TAIR10)
RNA-dependent RNA polymerase 2 (RDR2); CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase 1 (TAIR:AT1G14790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G11130-MONOMERBioGrid:12013BRENDA:2.7.7.48EC:2.7.7.48
eggNOG:ENOG410XQMQeggNOG:KOG0988EMBL:AF080120EMBL:AL049876
EMBL:AL161531EMBL:CP002687EnsemblPlants:AT4G11130EnsemblPlants:AT4G11130.1
entrez:826714GeneID:826714Genevisible:O82504GO:GO:0003723
GO:GO:0003968GO:GO:0005634GO:GO:0005654GO:GO:0005730
GO:GO:0007267GO:GO:0010495GO:GO:0016246GO:GO:0016458
GO:GO:0030422GO:GO:0050832GO:GO:0070919Gramene:AT4G11130.1
hmmpanther:PTHR23079hmmpanther:PTHR23079:SF5HOGENOM:HOG000239464InParanoid:O82504
InterPro:IPR007855KEGG:ath:AT4G11130KO:K11699ncoils:Coil
OMA:GNSVWMFPANTHER:PTHR23079PaxDb:O82504Pfam:O82504
Pfam:PF05183PhylomeDB:O82504PIR:T01920PRIDE:O82504
PRO:PR:O82504ProteinModelPortal:O82504Proteomes:UP000006548RefSeq:NP_192851.1
SMR:O82504STRING:3702.AT4G11130.1TAIR:AT4G11130tair10-symbols:RDR2
tair10-symbols:SMD1UniGene:At.43417UniProt:O82504
Coordinates (TAIR10) chr4:+:6780522..6784390
Molecular Weight (calculated) 129332.00 Da
IEP (calculated) 6.62
GRAVY (calculated) -0.25
Length 1133 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVSETTTNRS TVKISNVPQT IVADELLRFL ELHLGEDTVF ALEIPTTRDN WKPRDFARVQ FTTLEVKSRA QLLSSQSKLL FKTHNLRLSE AYDDIIPRPV
0101: DPRKRLDDIV LTVGFPESDE KRFCALEKWD GVRCWILTEK RRVEFWVWES GDCYKIEVRF EDIIETLSCC VNGDASEIDA FLLKLKYGPK VFKRVTVHIA
0201: TKFKSDRYRF CKEDFDFMWI RTTDFSGSKS IGTSTCFCLE VHNGSTMLDI FSGLPYYRED TLSLTYVDGK TFASAAQIVP LLNAAILGLE FPYEILFQLN
0301: ALVHAQKISL FAASDMELIK ILRGMSLETA LVILKKLHQQ SSICYDPVFF VKTQMQSVVK KMKHSPASAY KRLTEQNIMS CQRAYVTPSK IYLLGPELET
0401: ANYVVKNFAE HVSDFMRVTF VEEDWSKLPA NALSVNSKEG YFVKPSRTNI YNRVLSILGE GITVGPKRFE FLAFSASQLR GNSVWMFASN EKVKAEDIRE
0501: WMGCFRKIRS ISKCAARMGQ LFSASRQTLI VRAQDVEQIP DIEVTTDGAD YCFSDGIGKI SLAFAKQVAQ KCGLSHVPSA FQIRYGGYKG VIAVDRSSFR
0601: KLSLRDSMLK FDSNNRMLNV TRWTESMPCF LNREIICLLS TLGIEDAMFE AMQAVHLSML GNMLEDRDAA LNVLQKLSGE NSKNLLVKML LQGYAPSSEP
0701: YLSMMLRVHH ESQLSELKSR CRILVPKGRI LIGCMDEMGI LEYGQVYVRV TLTKAELKSR DQSYFRKIDE ETSVVIGKVV VTKNPCLHPG DIRVLDAIYE
0801: VHFEEKGYLD CIIFPQKGER PHPNECSGGD LDGDQFFVSW DEKIIPSEMD PPMDYAGSRP RLMDHDVTLE EIHKFFVDYM ISDTLGVIST AHLVHADRDP
0901: EKARSQKCLE LANLHSRAVD FAKTGAPAEM PYALKPREFP DFLERFEKPT YISESVFGKL YRAVKSSLAQ RKPEAESEDT VAYDVTLEEA GFESFIETAK
1001: AHRDMYGEKL TSLMIYYGAA NEEEILTGIL KTKEMYLARD NRRYGDMKDR ITLSVKDLHK EAMGWFEKSC EDEQQKKKLA SAWYYVTYNP NHRDEKLTFL
1101: SFPWIVGDVL LDIKAENAQR QSVEEKTSGL VSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)