AT4G11130.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : RNA-dependent RNA polymerase 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
RNA-dependent RNA polymerase 2 (RDR2); CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase 1 (TAIR:AT1G14790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:6780522..6784390 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 129332.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.62 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 1133 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
0001: MVSETTTNRS TVKISNVPQT IVADELLRFL ELHLGEDTVF ALEIPTTRDN WKPRDFARVQ FTTLEVKSRA QLLSSQSKLL FKTHNLRLSE AYDDIIPRPV 0101: DPRKRLDDIV LTVGFPESDE KRFCALEKWD GVRCWILTEK RRVEFWVWES GDCYKIEVRF EDIIETLSCC VNGDASEIDA FLLKLKYGPK VFKRVTVHIA 0201: TKFKSDRYRF CKEDFDFMWI RTTDFSGSKS IGTSTCFCLE VHNGSTMLDI FSGLPYYRED TLSLTYVDGK TFASAAQIVP LLNAAILGLE FPYEILFQLN 0301: ALVHAQKISL FAASDMELIK ILRGMSLETA LVILKKLHQQ SSICYDPVFF VKTQMQSVVK KMKHSPASAY KRLTEQNIMS CQRAYVTPSK IYLLGPELET 0401: ANYVVKNFAE HVSDFMRVTF VEEDWSKLPA NALSVNSKEG YFVKPSRTNI YNRVLSILGE GITVGPKRFE FLAFSASQLR GNSVWMFASN EKVKAEDIRE 0501: WMGCFRKIRS ISKCAARMGQ LFSASRQTLI VRAQDVEQIP DIEVTTDGAD YCFSDGIGKI SLAFAKQVAQ KCGLSHVPSA FQIRYGGYKG VIAVDRSSFR 0601: KLSLRDSMLK FDSNNRMLNV TRWTESMPCF LNREIICLLS TLGIEDAMFE AMQAVHLSML GNMLEDRDAA LNVLQKLSGE NSKNLLVKML LQGYAPSSEP 0701: YLSMMLRVHH ESQLSELKSR CRILVPKGRI LIGCMDEMGI LEYGQVYVRV TLTKAELKSR DQSYFRKIDE ETSVVIGKVV VTKNPCLHPG DIRVLDAIYE 0801: VHFEEKGYLD CIIFPQKGER PHPNECSGGD LDGDQFFVSW DEKIIPSEMD PPMDYAGSRP RLMDHDVTLE EIHKFFVDYM ISDTLGVIST AHLVHADRDP 0901: EKARSQKCLE LANLHSRAVD FAKTGAPAEM PYALKPREFP DFLERFEKPT YISESVFGKL YRAVKSSLAQ RKPEAESEDT VAYDVTLEEA GFESFIETAK 1001: AHRDMYGEKL TSLMIYYGAA NEEEILTGIL KTKEMYLARD NRRYGDMKDR ITLSVKDLHK EAMGWFEKSC EDEQQKKKLA SAWYYVTYNP NHRDEKLTFL 1101: SFPWIVGDVL LDIKAENAQR QSVEEKTSGL VSI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)