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AT3G05430.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tudor/PWWP/MBT superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tudor/PWWP/MBT superfamily protein; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT5G27650.1); Has 708 Blast hits to 664 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 463; Fungi - 18; Plants - 206; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFDNeggNOG:ENOG410YF1ZEMBL:AB493602EMBL:AC009606
EMBL:CP002686EnsemblPlants:AT3G05430EnsemblPlants:AT3G05430.1entrez:819708
GeneID:819708Gramene:AT3G05430.1hmmpanther:PTHR10688hmmpanther:PTHR10688:SF1
HOGENOM:HOG000091015InterPro:IPR000313KEGG:ath:AT3G05430KO:K17398
OMA:RCALAPQPfam:PF00855Pfscan:PS50812PhylomeDB:Q9MA56
PROSITE:PS50812Proteomes:UP000006548RefSeq:NP_187194.1SMART:SM00293
SMR:Q9MA56STRING:3702.AT3G05430.1SUPFAM:SSF63748TAIR:AT3G05430
UniGene:At.40672UniProt:Q9MA56
Coordinates (TAIR10) chr3:+:1567745..1571037
Molecular Weight (calculated) 107906.00 Da
IEP (calculated) 10.04
GRAVY (calculated) -0.64
Length 965 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSAEVNVNP RVFGDSFVTF SGNGSGKFEM IDQAEAFLME LDSVAADTGS DGNGNVDLGS RVSNSETEPR FCEMKREIRD SDHRFYELCN ESGEKKMEKR
101: RVPDYKSFLS EFDDYVAREK MGSRNSKALS YGFEVGDMVW GKVKSHPWWP GQIFNEAFAS PSVRRVKKMG YVLVAFFGDN SYGWFDPAEL IPFEPHVKEK
201: SQQTSSDHFA KAVEEAMNEV GRRSALGLTC KCRNQYNFRP INAQGYFAVD VPDYEVQAIY SSKQIQKARD SFSSVQTLAF VKRCALAPQE CDTDSLKSFQ
301: KKVAVCAFRR AVFEEFDETY EQAFRARSVY CLMKTHEPLN RAPLRVPLSG SLVSAETLGN PKSYTKAMNV KDSTKQDKYL PKRREEAGDM TVQFGQVQES
401: SQFQGINGSS AWDRLLQRRT PCLQTPRKHE QTGLVSMNFT SSSGNIPGKK SSVSKLSRDD DKGLAQESDV RMGEKATLFP DQEKFEPMKS LKQDETGTNS
501: RSNKSSLKLF SGGKFSAGVG IKKGNVVKRS SGEMKSENCP PEPKKKKKEY VSELNRDTPD KRKALSSGEA WAKKSSQVDS AKRRSNMLIV KLDGLQLLSN
601: LLALSLDPLF GSSDRSSFRV IRQFFFHFRS HVYQKSLATS PSATKLSKSA KTLCRANEQS KAGRNRISSD SQQDVPSTKK LKKTIQFKPL ASDKKTNQDA
701: TKRSSLAPLN PVRDQCRVPI NAKPAIVQQE KKTGPSAMVV EPTMLVMMFP PGESLPSIDL LKARFGRFGQ LDQSAIRVSW KSSICRVGFL YKLDAQTALR
801: YVSGSKSLFG NVNVTYFLRD MKASSASGDH ELKKAKRPKT DKPITKPLNQ LLEQAPPVHQ PNIQLKSCLK KPGNNRNGNH RTVRVKFMLG EKETESPFSV
901: SILPLSSQDS EPKPVNNQVD HVEPPLDPSQ LKVDISLQMM ELLTRCNDAV ANVTGLLGYV PYHSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)