AT5G57250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G59900.1); Has 71706 Blast hits to 14592 proteins in 301 species: Archae - 6; Bacteria - 54; Metazoa - 648; Fungi - 890; Plants - 68117; Viruses - 0; Other Eukaryotes - 1991 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:23195609..23198524 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108626.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.25 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.13 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 971 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKLYPRTSSG LFSLQSLLKS GFSPTLNSID RFLRYLYRLQ KFNCILQFYS QLDSKQININ HRIYSIVSWA FLNLNRYEDA EKFINIHISK ASIFPRTHML 101: DSLIHGFSIT RDDPSKGLLI LRDCLRNHGA FPSSLTFCSL IYRFVEKGEM DNAIEVLEMM TNKNVNYPFD NFVCSAVISG FCKIGKPELA LGFFESAVDS 201: GVLVPNLVTY TTLVSALCQL GKVDEVRDLV RRLEDEGFEF DCVFYSNWIH GYFKGGALVD ALMQDREMVE KGMNRDVVSY SILIDGLSKE GNVEEALGLL 301: GKMIKEGVEP NLITYTAIIR GLCKMGKLEE AFVLFNRILS VGIEVDEFLY VTLIDGICRK GNLNRAFSML GDMEQRGIQP SILTYNTVIN GLCMAGRVSE 401: ADEVSKGVVG DVITYSTLLD SYIKVQNIDA VLEIRRRFLE AKIPMDLVMC NILLKAFLLM GAYGEADALY RAMPEMDLTP DTATYATMIK GYCKTGQIEE 501: ALEMFNELRK SSVSAAVCYN RIIDALCKKG MLDTATEVLI ELWEKGLYLD IHTSRTLLHS IHANGGDKGI LGLVYGLEQL NSDVCLGMLN DAILLLCKRG 601: SFEAAIEVYM IMRRKGLTVT FPSTILKTLV DNLRSLDAYL LVVNAGETTL SSMDVIDYTI IINGLCKEGF LVKALNLCSF AKSRGVTLNT ITYNSLINGL 701: CQQGCLVEAL RLFDSLENIG LVPSEVTYGI LIDNLCKEGL FLDAEKLLDS MVSKGLVPNI IIYNSIVDGY CKLGQTEDAM RVVSRKMMGR VTPDAFTVSS 801: MIKGYCKKGD MEEALSVFTE FKDKNISADF FGFLFLIKGF CTKGRMEEAR GLLREMLVSE SVVKLINRVD AELAESESIR GFLVELCEQG RVPQAIKILD 901: EISSTIYPSG KNLGSYQRLQ FLNDVNEEEI KKKDYVHDFH SLHSTVSSLC TSGKLEQANE FVMSVLSCMP R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)