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AT5G57250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G59900.1); Has 71706 Blast hits to 14592 proteins in 301 species: Archae - 6; Bacteria - 54; Metazoa - 648; Fungi - 890; Plants - 68117; Viruses - 0; Other Eukaryotes - 1991 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB019233EMBL:CP002688
EnsemblPlants:AT5G57250EnsemblPlants:AT5G57250.1entrez:5008310Gene3D:1.25.40.10
GeneID:5008310Genevisible:Q9LVD3GO:GO:0005739Gramene:AT5G57250.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF348HOGENOM:HOG000115647InParanoid:Q9LVD3
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT5G57250KO:K17964
OMA:AADNFTYPaxDb:Q9LVD3Pfam:PF01535Pfam:PF12854
Pfam:PF13041Pfam:Q9LVD3Pfscan:PS51375PhylomeDB:Q9LVD3
PRIDE:Q9LVD3PRO:PR:Q9LVD3PROSITE:PS51375ProteinModelPortal:Q9LVD3
Proteomes:UP000006548RefSeq:NP_001078759.1SMR:Q9LVD3STRING:3702.AT5G57250.1
SUPFAM:SSF48452SUPFAM:SSF81901TAIR:AT5G57250TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.29340UniGene:At.69268UniProt:Q9LVD3
Coordinates (TAIR10) chr5:-:23195609..23198524
Molecular Weight (calculated) 108626.00 Da
IEP (calculated) 5.25
GRAVY (calculated) 0.13
Length 971 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLYPRTSSG LFSLQSLLKS GFSPTLNSID RFLRYLYRLQ KFNCILQFYS QLDSKQININ HRIYSIVSWA FLNLNRYEDA EKFINIHISK ASIFPRTHML
101: DSLIHGFSIT RDDPSKGLLI LRDCLRNHGA FPSSLTFCSL IYRFVEKGEM DNAIEVLEMM TNKNVNYPFD NFVCSAVISG FCKIGKPELA LGFFESAVDS
201: GVLVPNLVTY TTLVSALCQL GKVDEVRDLV RRLEDEGFEF DCVFYSNWIH GYFKGGALVD ALMQDREMVE KGMNRDVVSY SILIDGLSKE GNVEEALGLL
301: GKMIKEGVEP NLITYTAIIR GLCKMGKLEE AFVLFNRILS VGIEVDEFLY VTLIDGICRK GNLNRAFSML GDMEQRGIQP SILTYNTVIN GLCMAGRVSE
401: ADEVSKGVVG DVITYSTLLD SYIKVQNIDA VLEIRRRFLE AKIPMDLVMC NILLKAFLLM GAYGEADALY RAMPEMDLTP DTATYATMIK GYCKTGQIEE
501: ALEMFNELRK SSVSAAVCYN RIIDALCKKG MLDTATEVLI ELWEKGLYLD IHTSRTLLHS IHANGGDKGI LGLVYGLEQL NSDVCLGMLN DAILLLCKRG
601: SFEAAIEVYM IMRRKGLTVT FPSTILKTLV DNLRSLDAYL LVVNAGETTL SSMDVIDYTI IINGLCKEGF LVKALNLCSF AKSRGVTLNT ITYNSLINGL
701: CQQGCLVEAL RLFDSLENIG LVPSEVTYGI LIDNLCKEGL FLDAEKLLDS MVSKGLVPNI IIYNSIVDGY CKLGQTEDAM RVVSRKMMGR VTPDAFTVSS
801: MIKGYCKKGD MEEALSVFTE FKDKNISADF FGFLFLIKGF CTKGRMEEAR GLLREMLVSE SVVKLINRVD AELAESESIR GFLVELCEQG RVPQAIKILD
901: EISSTIYPSG KNLGSYQRLQ FLNDVNEEEI KKKDYVHDFH SLHSTVSSLC TSGKLEQANE FVMSVLSCMP R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)