AT5G11470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : bromo-adjacent homology (BAH) domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT3G15605.4); Has 602 Blast hits to 478 proteins in 106 species: Archae - 0; Bacteria - 17; Metazoa - 295; Fungi - 38; Plants - 91; Viruses - 4; Other Eukaryotes - 157 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:3662757..3667041 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85197.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.96 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||
| Length | 757 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEESVASEGL EFKWGKKKGV GGKKKDVQFY ESFTYDGDEY RLYDCVLVGN ASEPDSTEPF IGMIIKIWEH ANKHIPKKVK LLWFFKPSEI APYLEGVPNV 101: LANEVFLASG EGLGLANTNQ LEAIGGKCSV LCISKDKRNP QPSDEKFNSA DFVFCRAFDV GSCKVVDTID DKIAGVDVKF IFNRACSEKE ATAVQNIEAD 201: VNGKSDSLKP NGPLARGASG SVRKIEDSAF ESSDCKENSN GCKEEKEKGH YQLAIKKSTL AEERSNKDSG SRGNHYNGKD QESEVKKQLT KQKSMPGEER 301: YSNSFEASGS RTIHSISKKA QENDVKKQLT KQKSMPAGER YSQESSGLDD RPLKKQKLDG SVTVRDGWDT TILQNITSDG KKDTGSFKRP RDKVTIEEVP 401: PEKRSFVKNR DLVVSVSEGK TTKTVTEKGI SKKPSFGRAE DKMSADDNER NYQVTEVCRR PDARVVKSLD ARMWFCKNTI LKGAVLFYSP SHCMLYSCSD 501: VLSFFSSYYV TTMLGNIEPW EESMREAEKK GTVVLLQNLD PTYTSDEVED IVYSALNQQC EARMIERTSV TIPHIGEALV IFKTREVAER VIRRLDEGCL 601: LLSSGRPLVA SFAKITPPGK PSLFSGHIKL HKTQTRREMR DAVATSHSSQ PNNLEFDMAM EWCLHQARHE QASESVSKRQ LEEMKSLRIN FKLKLPYETQ 701: EFWFHAIQSP NFDSEEYTDA ASGLKSDDPF VVTYFFVRVS FTSEVLNFCV DQERSRE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)