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AT3G48470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.942
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : embryo defective 2423
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 2423 (EMB2423); CONTAINS InterPro DOMAIN/s: Telomere length regulation protein (InterPro:IPR019337); Has 246 Blast hits to 237 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 75; Plants - 52; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR2XeggNOG:KOG4346EMBL:CP002686EnsemblPlants:AT3G48470
EnsemblPlants:AT3G48470.1entrez:824006GeneID:824006Gramene:AT3G48470.1
hmmpanther:PTHR15830InParanoid:F4JF17InterPro:IPR019337iPTMnet:F4JF17
KEGG:ath:AT3G48470KO:K11137OMA:TKDVMHSPaxDb:F4JF17
Pfam:PF10193PRIDE:F4JF17ProteinModelPortal:F4JF17Proteomes:UP000006548
RefSeq:NP_680117.3STRING:3702.AT3G48470.1TAIR:AT3G48470tair10-symbols:EMB2423
UniGene:At.45015UniProt:F4JF17
Coordinates (TAIR10) chr3:+:17951689..17956754
Molecular Weight (calculated) 114708.00 Da
IEP (calculated) 5.77
GRAVY (calculated) -0.18
Length 1027 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAEGTKQERT LENNLLHKVG EAVSAISDAK HVDQVISAIH SVAVLLFPVD PSLFSGSIGD KYRERVCSSV VPSADERNEW LETFYRGVAF PTFARVLLLD
0101: VASDWLSCFP ISVQKHLYDK FFLDGSVIEV VQVLVPFLHH VGDGGVNANS VQTNVERLLI LCLLENDGVL KITKEIGNIY QGHNSSNGSL KPLLSRLSQI
0201: LTSIPDKARL KSPPLLSSNL YFKHITNQLL QILDDRASCT EANCTVIVLS FVGEVFSRIC RRGLSDLLLS EVTPHVLAQV RRLLNSKIGA IEVDTFQLDP
0301: TTRIWSKTME AVTDPYAVEK MAEQLLHQLY AEHPSDVEAF WTIWTLFHRN VIHQASVRQA KCFLWQLDSF FRYPFFFFHF HPNAVKQCVL ECPPVTNTLA
0401: KGDVTQGLLE TTQRLASVWS KREFLQSVQL EQQAYLQFLF PVTDISDITA ALGLCLENMS REELDRTKDV MHSILQGVSC RLENPGDLVR KMASSIAFMF
0501: SKVIDPKNPL YLDDSITDNA IDWEFGLQTA SITNTMENGD GENKRSASLT EVNESSRRNK QKENRKSKNI SAFVLADPNE IVDLATLNCD TESDKDDGDD
0601: DASVSSDNSS VTSLEPYDLM DDDKDLGKQF THLVDVVGAL RKTDDADGVE KAIYVAEKLV RASPDELTHI AGDLARTLVQ VRCSDIAIEG EEDSAEEKRQ
0701: RALIALLVTR PFESLETLNN ILYSPNVDVS QRIMILDVMA EAARELANSK TLKPKHEARG PLISNISDPQ PWYLPSNAST PWKKVSETGS FHLNWANRFE
0801: RELQSKPGQT KKGKSRRWSL KSADRDQNST DWSQNRFPLY AAAFMLPAMK EFDKKRHGVD LLGRDFVVLG KLVHMLGVCM QCASMHPEAS ALAISLLDML
0901: QRREVCNHPE AYVRRAVLFA ASSVLVSLHP SYIVSTLVEG NLDLSRALEW IRTWALQIAD SDIDRDCYTM ALSCLQLHAE MALQTSRALE STGGSSSSSS
1001: IRPMNISLPS GISKLTSIKL PSSNVHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)