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AT3G13682.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.962
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : LSD1-like2
Curator
Summary (TAIR10)
Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering loci FLC and FWA.
Computational
Description (TAIR10)
LSD1-like2 (LDL2); CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), SWIRM (InterPro:IPR007526); BEST Arabidopsis thaliana protein match is: LSD1-like 1 (TAIR:AT1G62830.1); Has 5703 Blast hits to 5142 proteins in 914 species: Archae - 48; Bacteria - 2121; Metazoa - 1514; Fungi - 564; Plants - 617; Viruses - 0; Other Eukaryotes - 839 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G13682-MONOMEREC:1.-.-.-eggNOG:ENOG410XSNCeggNOG:KOG0029
EMBL:AP001307EMBL:CP002686EnsemblPlants:AT3G13682EnsemblPlants:AT3G13682.1
entrez:820577Gene3D:1.10.10.10Gene3D:3.40.50.720GeneID:820577
Genevisible:Q9LID0GO:GO:0003677GO:GO:0006351GO:GO:0006355
GO:GO:0016491GO:GO:0051568Gramene:AT3G13682.1gramene_pathway:1.5.3.14
gramene_pathway:1.5.3.16gramene_pathway:PWY-3981-ARAgramene_pathway:PWY-6441hmmpanther:PTHR10742
hmmpanther:PTHR10742:SF210HOGENOM:HOG000029979InParanoid:Q9LID0InterPro:IPR002937
InterPro:IPR007526InterPro:IPR009057InterPro:IPR011991InterPro:IPR016040
InterPro:IPR023753iPTMnet:Q9LID0KEGG:ath:AT3G13682KO:K11450
OMA:VYTQKMGPaxDb:Q9LID0Pfam:PF01593Pfam:PF04433
Pfam:Q9LID0Pfscan:PS50934PhylomeDB:Q9LID0PRIDE:Q9LID0
PRO:PR:Q9LID0PROSITE:PS50934ProteinModelPortal:Q9LID0Proteomes:UP000006548
RefSeq:NP_187981.1SMR:Q9LID0STRING:3702.AT3G13682.1SUPFAM:SSF46689
SUPFAM:SSF51905SUPFAM:SSF54373TAIR:AT3G13682tair10-symbols:LDL2
UniGene:At.53297UniProt:Q9LID0
Coordinates (TAIR10) chr3:-:4479193..4481509
Molecular Weight (calculated) 82354.90 Da
IEP (calculated) 7.17
GRAVY (calculated) -0.16
Length 746 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV
101: ARWRGNVGIW LLKDQIRETV SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEGTEG SVIVVGAGLA GLAAARQLLS FGFKVLVLEG RSRPGGRVYT
201: QKMGGKDRFA AVELGGSVIT GLHANPLGVL ARQLSIPLHK VRDNCPLYNS EGVLVDKVAD SNVEFGFNKL LDKVTEVREM MEGAAKKISL GEVLETLRVL
301: YGVAKDSEER KLFDWHLANL EYANAGCLSN LSAAYWDQDD PYEMGGDHCF LAGGNWRLIN ALAEGLPIIY GKSVDTIKYG DGGVEVISGS QIFQADMILC
401: TVPLGVLKKR SIKFEPELPR RKQAAIDRLG FGLLNKVAML FPSVFWGDEL DTFGCLNESS INRGEFFLFY AYHTVSGGPA LVALVAGEAA QRFECTEPSV
501: LLHRVLKKLR GIYGPKGVVV PDPIQTVCTR WGSDPLSYGS YSHVRVGSSG VDYDILAESV SNRLFFAGEA TTRQHPATMH GAYLSGLREA SKILHVANYL
601: RSNLKKPVQR YSGVNINVLE DMFKRPDIAI GKLSFVFNPL TDDPKSFGLV RVCFDNFEED PTNRLQLYTI LSREQANKIK ELDENSNESK LSCLMNTLGL
701: KLMGANSVLD TGGALISVIA NARRGRSRSH VVAGQCNLPL NPLHFN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)