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AT1G48880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.539
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRICHOME BIREFRINGENCE-LIKE 7
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 7 (TBL7); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G06080.2); Has 1333 Blast hits to 1318 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1329; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IUYFeggNOG:ENOG410Y13EEMBL:AC084414EMBL:CP002684
EnsemblPlants:AT1G48880EnsemblPlants:AT1G48880.1entrez:841310GeneID:841310
Genevisible:F4I037GO:GO:0005794GO:GO:0016021GO:GO:0016413
GO:GO:0071554Gramene:AT1G48880.1hmmpanther:PTHR32285hmmpanther:PTHR32285:SF34
HOGENOM:HOG000238066InParanoid:F4I037InterPro:IPR025846InterPro:IPR026057
InterPro:IPR029962InterPro:IPR029964KEGG:ath:AT1G48880OMA:EKGFNCL
PANTHER:PTHR32285PANTHER:PTHR32285:SF34PaxDb:F4I037Pfam:F4I037
Pfam:PF13839Pfam:PF14416PIR:F96526PRIDE:F4I037
PRO:PR:F4I037Proteomes:UP000006548RefSeq:NP_175319.2TAIR:AT1G48880
tair10-symbols:TBL7TMHMM:TMhelixUniGene:At.38341UniProt:F4I037
Coordinates (TAIR10) chr1:+:18081033..18082650
Molecular Weight (calculated) 50619.40 Da
IEP (calculated) 8.75
GRAVY (calculated) -0.16
Length 445 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNFTKSSSF NRRALSSLAI ESPRNSSSSV FTSPIGSAFA SPRSQNFGGS PRPSTNRLKE ISYLFQVLII AGTIVSFLVI IAGGYLYVVP SLGQTFLGYN
101: GALEFNSSVV GDTECDIFDG NWVVDDNYPL YNASECPFVE KGFNCLGNGR GHDEYLKWRW KPKHCTVPRF EVRDVLKRLR GKRIVFVGDS MSRTQWESLI
201: CMLMTGLEDK RSVYEVNGNN ITKRIRFLGV RFSSYNFTVE FYRSVFLVQP GRLRWHAPKR VKSTLKLDVL DVINHEWSSA DFLIFNTGQW WVPGKLFETG
301: CYFQVGNSLR LGMSIPAAYR VALETWASWI ESTVDPNKTR VLFRTFEPSH WSDHRSCNVT KYPAPDTEGR DKSIFSEMIK EVVKNMTIPV SILDVTSMSA
401: FRSDGHVGLW SDNPLVPDCS HWCLPGVPDI WNEILLFFLF RQPVQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)