AT1G22310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : methyl-CPG-binding domain 8 | ||||||||||||
| Curator Summary (TAIR10) |
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. | ||||||||||||
| Computational Description (TAIR10) |
methyl-CPG-binding domain 8 (MBD8); FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956), DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 54 Blast hits to 54 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 44; Viruses - 2; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7881714..7883418 | ||||||||||||
| Molecular Weight (calculated) | 48265.40 Da | ||||||||||||
| IEP (calculated) | 10.11 | ||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||
| Length | 425 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSPLVAGNRH FSVSALRATL NHRRNLLRRN VRETILPVKN KRKSRRFSDL CSMSIRIRVK RKKTKERKSS KITKGTSGNK IKRKRGRPRK IRNPSEENEV 101: LDLTGEASTY VFVDKTSSNL GMVSRVGSSG ISLDSNSVKR KRGRPPKNKE EIMNLEKRDS AIVNISAFDK EELVVNLENR EGTIVDLSAL ASVSEDPYEE 201: ELRRITVGLK TKEEILGFLE QLNGEWVNIG KKKKVVNACD YGGYLPRGWR LMLYIKRKGS NLLLACRRYI SPDGQQFETC KEVSTYLRSL LESPSKNQHY 301: YLQSDNKTLG QQPVIANESL LGNSDSMDSE TMQYLESGRT SSEVFEEAKA VENGNEADRV KTSLMQKDDN ADFLNGVEDN DDDMKKRDGN MENLATLSNS 401: EMTKSLPTTT NELQQYFSSQ INRVQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)