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AT1G63020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear RNA polymerase D1A
Curator
Summary (TAIR10)
Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D). Required for posttranscriptional gene silencing.
Computational
Description (TAIR10)
nuclear RNA polymerase D1A (NRPD1A); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083), Protein of unknown function DUF3223 (InterPro:IPR021602), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase D1B (TAIR:AT2G40030.1); Has 18758 Blast hits to 17462 proteins in 6889 species: Archae - 580; Bacteria - 5923; Metazoa - 1639; Fungi - 1387; Plants - 5197; Viruses - 287; Other Eukaryotes - 3745 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G63020-MONOMERBioCyc:ARA:GQT-493-MONOMERBioGrid:27826DIP:DIP-48679N
EC:2.7.7.6eggNOG:COG0086eggNOG:KOG0260EMBL:AC010795
EMBL:AC011000EMBL:AY826515EMBL:CP002684EMBL:DQ020657
EnsemblPlants:AT1G63020EnsemblPlants:AT1G63020.1EnsemblPlants:AT1G63020.2entrez:842605
GeneID:842605Genevisible:Q9LQ02GO:GO:0000418GO:GO:0003677
GO:GO:0003899GO:GO:0005634GO:GO:0005654GO:GO:0005666
GO:GO:0006346GO:GO:0006383GO:GO:0007267GO:GO:0010495
GO:GO:0016246GO:GO:0030422GO:GO:0031047GO:GO:0046872
Gramene:AT1G63020.1Gramene:AT1G63020.2hmmpanther:PTHR19376hmmpanther:PTHR19376:SF40
HOGENOM:HOG000083760InParanoid:Q9LQ02InterPro:IPR000722InterPro:IPR006592
InterPro:IPR007066InterPro:IPR007080InterPro:IPR007081InterPro:IPR007083
InterPro:IPR021602iPTMnet:Q9LQ02KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6
KEGG:ath:AT1G63020KO:K16250ncoils:CoilOMA:KICPGCK
PaxDb:Q9LQ02Pfam:PF00623Pfam:PF04983Pfam:PF04997
Pfam:PF04998Pfam:PF05000Pfam:PF11523Pfam:Q9LQ02
PhylomeDB:Q9LQ02PIR:D96655PRIDE:Q9LQ02PRO:PR:Q9LQ02
ProteinModelPortal:Q9LQ02Proteomes:UP000006548RefSeq:NP_001185298.1RefSeq:NP_176490.2
SMART:SM00663SMR:Q9LQ02STRING:3702.AT1G63020.1SUPFAM:SSF64484
TAIR:AT1G63020tair10-symbols:NRPD1tair10-symbols:NRPD1Atair10-symbols:POL IVA
tair10-symbols:SDE4tair10-symbols:SMD2UniGene:At.36192UniProt:Q9LQ02
Coordinates (TAIR10) chr1:-:23355329..23361126
Molecular Weight (calculated) 162530.00 Da
IEP (calculated) 7.51
GRAVY (calculated) -0.27
Length 1453 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)