AT4G13345.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Serinc-domain containing serine and sphingolipid biosynthesis protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
maternal effect embryo arrest 55 (MEE55); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G24460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7767292..7769426 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44980.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.85 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.48 | ||||||||||||||||||||||||||||||||
| Length | 394 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METGTSIDNT GYEGIKNGSW FIQFRNGCNP WMARYVYGLI FLLANLLAWA LRDYGRGALT EMRKFKNCKE GGDCLGTEGV LRVSFGCFLF YFIMFLSTVG 101: TSKTHSSRDK WHSGWWFAKL FMLLGLTIFP FLLPSSIIQF YGEIAHFGAG VFLLIQLISI ISFITWLNEC FQAQKDAERC HVHVMLLATT AYTVCILGVI 201: LMYIWYVPEP SCLLNIFFIT WTLFLIQLMT SISLHPKINA GFLTPALMGL YVVFICWCAI RSEPVGETCN RKAEGSSRTD WLTIISFVVA LLAMVIATFS 301: TGVDSQCFQF RKDENHEEDA IPYGYGFFHF VFATGAMYFA MLLVGWNIHH SMKKWTIDVG WTSTWVRIVN EWLAVGVYIW MLVAPMVLKS RQTT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)