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AT3G48740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nodulin MtN3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: homolog of Medicago truncatula MTN3 (TAIR:AT5G23660.1); Has 1006 Blast hits to 953 proteins in 116 species: Archae - 0; Bacteria - 2; Metazoa - 236; Fungi - 0; Plants - 627; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).
Protein Annotations
BioGrid:9353eggNOG:ENOG4111M4ReggNOG:KOG1623EMBL:AF361825
EMBL:AF419559EMBL:AL133315EMBL:AY070412EMBL:AY078041
EMBL:AY096594EMBL:CP002686EnsemblPlants:AT3G48740EnsemblPlants:AT3G48740.1
entrez:824035GeneID:824035Genevisible:Q9SMM5GO:GO:0005886
GO:GO:0005887GO:GO:0008515GO:GO:0009793GO:GO:0010431
GO:GO:0015770GO:GO:0016021GO:GO:0034219GO:GO:0051119
GO:GO:0051260Gramene:AT3G48740.1hmmpanther:PTHR10791hmmpanther:PTHR10791:SF65
HOGENOM:HOG000237944InParanoid:Q9SMM5IntAct:Q9SMM5InterPro:IPR004316
iPTMnet:Q9SMM5KEGG:ath:AT3G48740KO:K15382OMA:CGNDRRA
PaxDb:Q9SMM5Pfam:PF03083Pfam:Q9SMM5PhylomeDB:Q9SMM5
PIR:T46218PRIDE:Q9SMM5PRO:PR:Q9SMM5ProteinModelPortal:Q9SMM5
Proteomes:UP000006548RefSeq:NP_190443.1STRING:3702.AT3G48740.1TAIR:AT3G48740
tair10-symbols:AtSWEET11tair10-symbols:SWEET11TMHMM:TMhelixUniGene:At.27455
UniProt:Q9SMM5
Coordinates (TAIR10) chr3:-:18052814..18054663
Molecular Weight (calculated) 31922.80 Da
IEP (calculated) 9.44
GRAVY (calculated) 0.57
Length 289 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLFNTENTW AFVFGLLGNL ISFAVFLSPV PTFYRIWKKK TTEGFQSIPY VVALFSATLW LYYATQKKDV FLLVTINAFG CFIETIYISM FLAYAPKPAR
101: MLTVKMLLLM NFGGFCAILL LCQFLVKGAT RAKIIGGICV GFSVCVFAAP LSIIRTVIKT RSVEYMPFSL SLTLTISAVI WLLYGLALKD IYVAFPNVLG
201: FALGALQMIL YVVYKYCKTS PHLGEKEVEA AKLPEVSLDM LKLGTVSSPE PISVVRQANK CTCGNDRRAE IEDGQTPKHG KQSSSAAAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)