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AT5G04230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.649
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phenyl alanine ammonia-lyase 3
Curator
Summary (TAIR10)
Member of Phenylalanine ammonialyase (PAL) gene family. Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).
Computational
Description (TAIR10)
phenyl alanine ammonia-lyase 3 (PAL3); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: phenylalanine ammonia-lyase 4 (TAIR:AT3G10340.1); Has 4848 Blast hits to 4828 proteins in 1399 species: Archae - 40; Bacteria - 2936; Metazoa - 80; Fungi - 127; Plants - 1170; Viruses - 0; Other Eukaryotes - 495 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1862-MONOMERBioGrid:15582BRENDA:4.3.1.24EC:4.3.1.24
eggNOG:COG2986eggNOG:KOG0222EMBL:AL391716EMBL:AY528562
EMBL:CP002688EMBL:L33679EnsemblPlants:AT5G04230EnsemblPlants:AT5G04230.1
entrez:830302ExpressionAtlas:P45725Gene3D:1.10.274.20Gene3D:1.10.275.10
GeneID:830302Genevisible:P45725GO:GO:0005737GO:GO:0006559
GO:GO:0009800GO:GO:0045548gramene_pathway:4.3.1.24gramene_pathway:PWY-1121
gramene_pathway:PWY-6444gramene_pathway:PWY-6457gramene_pathway:PWY1F-467gramene_plant_reactome:1119582
gramene_plant_reactome:6875580hmmpanther:PTHR10362hmmpanther:PTHR10362:SF19HOGENOM:HOG000214384
InParanoid:P45725InterPro:IPR001106InterPro:IPR005922InterPro:IPR008948
InterPro:IPR022313InterPro:IPR023144InterPro:IPR024083iPTMnet:P45725
KEGG:00360+4.3.1.24KEGG:00940+4.3.1.24KEGG:ath:AT5G04230KO:K10775
ncoils:CoilPaxDb:P45725Pfam:P45725Pfam:PF00221
PhylomeDB:P45725PIR:S52992PRIDE:P45725PRO:PR:P45725
PROSITE:PS00488ProteinModelPortal:P45725Proteomes:UP000006548Reactome:R-ATH-70921
RefSeq:NP_001190223.1RefSeq:NP_196043.2SABIO-RK:P45725scanprosite:PS00488
SMR:P45725STRING:3702.AT5G04230.2SUPFAM:SSF48557TAIR:AT5G04230
tair10-symbols:ATPAL3tair10-symbols:PAL3TIGRfam:TIGR01226TIGRFAMs:TIGR01226
UniGene:At.33157UniPathway:UPA00713UniProt:P45725
Coordinates (TAIR10) chr5:+:1160831..1163707
Molecular Weight (calculated) 76245.40 Da
IEP (calculated) 6.47
GRAVY (calculated) -0.16
Length 694 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFRQPNATA LSDPLNWNVA AEALKGSHLE EVKKMVKDYR KGTVQLGGET LTIGQVAAVA SGGPTVELSE EARGGVKASS DWVMESMNRD TDTYGITTGF
101: GSSSRRRTDQ GAALQKELIR YLNAGIFATG NEDDDRSNTL PRPATRAAML IRVNTLLQGY SGIRFEILEA ITTLLNCKIT PLLPLRGTIT ASGDLVPLSY
201: IAGFLIGRPN SRSVGPSGEI LTALEAFKLA GVSSFFELRP KEGLALVNGT AVGSALASTV LYDANILVVF SEVASAMFAE VMQGKPEFTD HLTHKLKHHP
301: GQIEAAAIME HILDGSSYVK EALHLHKIDP LQKPKQDRYA LRTSPQWLGP QIEVIRAATK MIEREINSVN DNPLIDVSRN KAIHGGNFQG TPIGVAMDNT
401: RLALASIGKL MFAQFTELVN DFYNNGLPSN LSGGRNPSLD YGLKGAEVAM ASYCSELQFL ANPVTNHVES ASQHNQDVNS LGLISSRTTA EAVVILKLMS
501: TTYLVALCQA FDLRHLEEIL KKAVNEVVSH TAKSVLAIEP FRKHDDILGV VNREYVFSYV DDPSSLTNPL MQKLRHVLFD KALAEPEGET DTVFRKIGAF
601: EAELKFLLPK EVERVRTEYE NGTFNVANRI KKCRSYPLYR FVRNELETRL LTGEDVRSPG EDFDKVFRAI SQGKLIDPLF ECLKEWNGAP ISIC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)