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AT5G54890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.789
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding CRS1 / YhbY (CRM) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding CRS1 / YhbY (CRM) domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, C globular stage, F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT4G31010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHQWeggNOG:ENOG410YFAKEMBL:AB005232EMBL:BP797158
EMBL:CP002688EnsemblPlants:AT5G54890EnsemblPlants:AT5G54890.1entrez:835580
Gene3D:3.30.110.60GeneID:835580Genevisible:Q9FFU1GO:GO:0003723
GO:GO:0005739GO:GO:0006397GO:GO:0008380GO:GO:0030529
Gramene:AT5G54890.1hmmpanther:PTHR31846hmmpanther:PTHR31846:SF3HOGENOM:HOG000242611
InParanoid:Q9FFU1InterPro:IPR001890KEGG:ath:AT5G54890OMA:NMIDDIH
PaxDb:Q9FFU1Pfam:PF01985Pfam:Q9FFU1Pfscan:PS51295
PhylomeDB:Q9FFU1PRIDE:Q9FFU1PRO:PR:Q9FFU1PROSITE:PS51295
ProteinModelPortal:Q9FFU1Proteomes:UP000006548RefSeq:NP_200300.1SMART:SM01103
SMR:Q9FFU1STRING:3702.AT5G54890.1SUPFAM:SSF75471TAIR:AT5G54890
UniGene:At.43134UniProt:Q9FFU1
Coordinates (TAIR10) chr5:+:22293346..22294909
Molecular Weight (calculated) 41413.20 Da
IEP (calculated) 8.70
GRAVY (calculated) -0.57
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSIRRSLTL AKEPKDLFLF LCNLRARCVS TDDYDPPFSP LSKPTKPPKE KKKQKTKKQD QSSELVNDLK IPVISDLPFD FRYSYSETNP EIEPIGFREP
101: KRFSPFGPGR LDRKWTGTTA LASPEIDQSQ WVEERARVLG ETLTEDEVTE LIERYRHSDC TRQINLGKGG VTHNMIDDIH NHWKKAEAVR IKCLGVPTLD
201: MDNICFHLEE KSGGKIVYRN INILVLYRGR NYDPKSRPII PLMLWKPHPP IYPRLVKNVA DGLEFEETKE MRNRGLHSPA LMKLTRNGVY VNVVGRVREE
301: FETEEIVRLD CTHVGMSDCK RIGVKLKEMV PCVPILFKDE QIILWRGKRT GEEELVTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)