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AT5G04110.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA GYRASE B3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA GYRASE B3 (GYRB3); FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: chromosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA topoisomerase, type IIA, subunit B, domain 2 (InterPro:IPR013506), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), DNA topoisomerase, type IIA, subunit B (InterPro:IPR000565), DNA topoisomerase, type IIA, subunit B/N-terminal (InterPro:IPR001241); BEST Arabidopsis thaliana protein match is: DNA GYRASE B2 (TAIR:AT5G04130.1); Has 21414 Blast hits to 21375 proteins in 6002 species: Archae - 105; Bacteria - 17678; Metazoa - 58; Fungi - 26; Plants - 200; Viruses - 8; Other Eukaryotes - 3339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G04110-MONOMEReggNOG:COG0187eggNOG:KOG0355EMBL:AY074291
EMBL:AY091322EMBL:AY519549EMBL:CP002688EnsemblPlants:AT5G04110
EnsemblPlants:AT5G04110.1entrez:830289Gene3D:3.30.230.10GeneID:830289
GO:GO:0003677GO:GO:0003918GO:GO:0005524GO:GO:0006265
GO:GO:0007059GO:GO:0009295Gramene:AT5G04110.1hmmpanther:PTHR10169
hmmpanther:PTHR10169:SF35InterPro:IPR000949InterPro:IPR001241InterPro:IPR013506
InterPro:IPR014721InterPro:IPR020568KEGG:ath:AT5G04110KO:K02470
OMA:YANGIRTPfam:PF00204Proteomes:UP000006548RefSeq:NP_196031.2
SMART:SM00433SMART:SM01189SMR:Q8VY11STRING:3702.AT5G04110.1
SUPFAM:SSF54211TAIR:AT5G04110tair10-symbols:GYRB3UniGene:At.33174
UniProt:Q8VY11
Coordinates (TAIR10) chr5:-:1110757..1114112
Molecular Weight (calculated) 60939.60 Da
IEP (calculated) 8.13
GRAVY (calculated) -0.62
Length 546 amino acids
Sequence (TAIR10)
(BLAST)
001: MYSGTVKRVS PLQDIKLRVQ ITVSLEMEDN DPNKEYLYAK GLSEFVTWLN ADKKPLHDVL GFRKEINGTT INIALQWCVD GYSNKILGYA NGIRTMDGGT
101: YIDGVKASIT RTLNSLVEKS KLVEDKDIIF TEEHVMEGLT CIVSVIVPKP EFEGQTQRLG NPNVREIVDQ SVQECLMESF ELHPDVFESI MSKSYNAYKT
201: DLAVKRARDV YSSESVAMVC AIESIPMKLT NSSSETSETF IGRGVSSGGA AKHDSDRCFK NKRTWEQPWS DDAVSTAPGE SSENTSGSSF EKKSKKPKSS
301: VSSSHLCFSS RQSADDANSP SPKDVSNKTP KDVTHGSNKD VSNKTSKDVI THGSNKTRPA IPIGPRFQAE IPVWIAPTKK GKFYGSPGDS NTLRWLGTGV
401: WPTYSLKKTV HSKKVGEGRS DSCSCASPRS TNCIKRHKKE AQELLEKEIN RAFSTWEFDQ MGEEIVLKSW TAKEERRFEA LVKKNPLSSS DGFWEFASNA
501: FPQKSKKDLL SYYYNVFLIK RMRLLKSSAA NNIDSDDDHY DDFLAG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)