AT3G18750.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : with no lysine (K) kinase 6 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
with no lysine (K) kinase 6 (WNK6); CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G49160.2); Has 109997 Blast hits to 108787 proteins in 3825 species: Archae - 81; Bacteria - 10561; Metazoa - 41131; Fungi - 10681; Plants - 29357; Viruses - 431; Other Eukaryotes - 17755 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:6454307..6456830 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 64869.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.80 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 567 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEGTDDASAL QEPPDPEVLE VDPTFRYIRY KEVIGKGAFK TVYKAFDEVD GIEVAWNQVR IDDVLQSPNC LERLYSEVRL LKSLKHNNII RFYNSWIDDK 101: NKTVNIITEL FTSGSLRHYR KKHRKVNMKA VKNWARQILM GLRYLHGQEP PIIHRDLKCD NIFINGNHGE VKIGDLGLAT VMEQANAKSV IGTPEFMAPE 201: LYDENYNELA DIYSFGMCML EMVTFDYPYC ECKNSAQIYK KVSSGIKPAS LSRVKDPEVK QFIEKCLLPA SERLSAKELL LDPFLQLNGL TMNNPLPLPD 301: IVMPKEGAFG DRCLMSEGPP TTRPSKTLSI DLDEDSNLPI VTFSDNSGSR CIEVRRAKRG NFFVLKGEEN DEQSVSLILR IVDENGRVRN IHFLFYQEGD 401: TASKVSSEMV EQLELTDQNV TFIAELIDIL LVNMIPTWKT DVTVDHLIHS QLNQNSRSHH NEAKPQKQEE TVFHDTCELV SHSCNSDCPR SDEEDKQCVD 501: ATKGEDKSSI QEVEEATEPV SLEEEERLRQ ELEEIEAKYQ EDMKEIATKR EEAIMETKKK LSLMKLK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)