suba logo
AT1G19650.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.949
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec14p-like phosphatidylinositol transfer family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: phosphatidylinositol transporter activity, transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G75370.1); Has 2627 Blast hits to 2615 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 801; Fungi - 541; Plants - 877; Viruses - 0; Other Eukaryotes - 408 (source: NCBI BLink).
Protein Annotations
BioGrid:23791eggNOG:ENOG410XRSQeggNOG:KOG1471EMBL:AC024609
EMBL:AK222017EMBL:AY056251EMBL:CP002684EnsemblPlants:AT1G19650
EnsemblPlants:AT1G19650.1entrez:838552ExpressionAtlas:F4HP88Gene3D:3.40.525.10
GeneID:838552Genevisible:F4HP88GO:GO:0000139GO:GO:0005215
GO:GO:0005886GO:GO:0015031hmmpanther:PTHR23324hmmpanther:PTHR23324:SF75
HOGENOM:HOG000196557InParanoid:F4HP88InterPro:IPR001071InterPro:IPR001251
InterPro:IPR011074iPTMnet:F4HP88ncoils:CoilOMA:EMPHEKE
PaxDb:F4HP88Pfam:F4HP88Pfam:PF00650Pfscan:PS50191
PIR:C86329PRIDE:F4HP88PRINTS:PR00180PRO:PR:F4HP88
PROSITE:PS50191ProteinModelPortal:F4HP88Proteomes:UP000006548RefSeq:NP_564092.1
SMART:SM00516SMART:SM01100SMR:F4HP88STRING:3702.AT1G19650.1
SUPFAM:SSF46938SUPFAM:SSF52087TAIR:AT1G19650TMHMM:TMhelix
UniGene:At.16183UniProt:F4HP88
Coordinates (TAIR10) chr1:-:6796431..6799537
Molecular Weight (calculated) 69283.80 Da
IEP (calculated) 8.45
GRAVY (calculated) -0.52
Length 608 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGPLDRFTS PCFSNNGEKR EKKSDFEVSE DEKKTRIGGI LKKKSSKSKF RHSLKRRGSR SIDRTLSLTF EDIHDAEELR YVSEFRQSLI SDHLLPPNLD
101: DYHIMLRFLF ARKFDLGKAK LMWTNMIQWR RDFGTDTILE DFEFPELDEV LRYYPQGYHG VDKEGRPVYI ERLGKVDASK LMQVTTLERY LRYHVKEFEK
201: TITVKFPACC IAAKRHIDSS TTILDVQGLG LKNFTKTARD LIIQLQKIDS DNYPETLHRM FIINAGSGFK LLWGTVKSFL DPKTVSKIHV LGNKYQNKLL
301: EMIDASQLPD FFGGTCTCAD QGGCMRSDKG PWKDSEILKM GRSGGTFCRH AGAFLSSDSQ ISSSDKPTYS LKVSDTSTAK SGSELEEMAS PKTNTNNHVP
401: KLTPVSEYAN GNISPTVLSE YEECVPMVDK VVDVAWQLQE MPNASEGPQY TSSLGKIGSV RHIWSWLTAF FISFFTLLAS LALPQTKEHS QLHSSSVRAE
501: LCDERIARES RPPSPPRSTI TERVIISSVL SRLGDLEKQI ENLHSRKSEM PHEKEELLNA AVYRVDALEA ELITTKKALH EALIRQEELL GYIDRQKEAK
601: CRRKKFCW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)